Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32990 269 / 3e-92 PRPL11 plastid ribosomal protein l11 (.1) AT5G51610 139 / 2e-41 Ribosomal protein L11 family protein (.1) AT4G35490 103 / 8e-28 MRPL11 mitochondrial ribosomal protein L11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010145 [exp] 362 / 1e-128 AT1G32990 306 / 7e-107 plastid ribosomal protein l11 (.1) Lus10035432 [exp] 100 / 2e-26 AT4G35490 272 / 2e-95 mitochondrial ribosomal protein L11 (.1) Lus10031045 [exp] 97 / 4e-25 AT4G35490 261 / 4e-91 mitochondrial ribosomal protein L11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450800 [exp] 283 / 1e-97 AT1G32990 308 / 4e-107 plastid ribosomal protein l11 (.1) Potri.011G150700 [exp] 278 / 2e-95 AT1G32990 303 / 3e-105 plastid ribosomal protein l11 (.1) Potri.007G058600 [exp] 103 / 5e-28 AT4G35490 239 / 2e-82 mitochondrial ribosomal protein L11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03946 [flax] [poplar] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF00298 [flax] [poplar] Ribosomal_L11 Ribosomal protein L11, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017349 pacid=23140169 polypeptide=Lus10017349 locus=Lus10017349.g ID=Lus10017349.BGIv1.0 annot-version=v1.0 ATGGCTACCACCTCCATCTCCCCCGCATTCTCTTCTCATCTCTGCAACACAAACAAGCTGTCATCGTCGTCTCCGTTCGCCGCCGGCATCGGCTTGTCCT CCCGCCCTTCCCCCTCCCTTCAATTCTTCCGCACAGTACCTCTCAGGAGCTTCTCCGTCAGAGCAATGGCTCCCCCGAAACCCGCCGGAGGCAAGGCCAA GAAAGTGGTGGGAATCATTAAGTTGGCTTTGGAGGCCGGAAAGGCTACTCCGGCGCCACCAGTCGGGCCGGCGCTGGGTTCCAAAGGTGTCAACATTATG GCCTTCTGCAAGGATTACAATGCTCGAACTGCTGACAAAGCTGGATATGTTATCCCTGTCGAGATTACTGTATTCGATGATAAGAGCTTCACTTTCATTC TCAAGACTCCACCTGCTTCAGTTCTATTGCTCAAGGCCGCAGGAGCGGAGAAAGGTTCCAAGGACCCGAAGAACGAGAAAGTGGGCGTGATCACGATCGA TCAACTCCGGACAGTAGCAACCGAAAAGCTACCGGACTTGAACTGCACCACCATCGAATCTGCGATGAGAATCATAGCCGGAACAGCAGCTAATATGGGG ATCGATATCGATCCGCCTATTCTAACTCCCAAGGTAAAGGAGGAGTTGTTGTATTAG
AA sequence Show only first row Show all	>Lus10017349 pacid=23140169 polypeptide=Lus10017349 locus=Lus10017349.g ID=Lus10017349.BGIv1.0 annot-version=v1.0 MATTSISPAFSSHLCNTNKLSSSSPFAAGIGLSSRPSPSLQFFRTVPLRSFSVRAMAPPKPAGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIM AFCKDYNARTADKAGYVIPVEITVFDDKSFTFILKTPPASVLLLKAAGAEKGSKDPKNEKVGVITIDQLRTVATEKLPDLNCTTIESAMRIIAGTAANMG IDIDPPILTPKVKEELLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	2.8	0.9231
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	3.5	0.9416
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	3.9	0.9036
AT1G53800			unknown protein		Lus10037460 [exp]	6.2	0.8637
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	9.5	0.9120
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	11.7	0.9079
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	14.5	0.8595
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	17.9	0.8995
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	18.5	0.9008
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	25.7	0.8923

Compare expression of checked genes

Lus10017349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.