Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77010 151 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 133 / 1e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 131 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 131 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34400 122 / 4e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 123 / 5e-31 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 122 / 7e-31 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 122 / 8e-31 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G26782 121 / 2e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 114 / 7e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010146 [exp] 266 / 1e-83 AT1G77010 682 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 128 / 5e-33 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036029 [exp] 127 / 6e-33 AT5G27110 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030124 [exp] 125 / 3e-32 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 126 / 5e-32 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10019098 [exp] 125 / 2e-31 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 123 / 6e-31 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040504 [exp] 121 / 2e-30 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 120 / 6e-30 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075200 [exp] 181 / 1e-51 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G186500 [exp] 136 / 9e-36 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 132 / 2e-34 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G007800 [exp] 130 / 2e-33 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 129 / 2e-33 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 127 / 3e-32 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 125 / 9e-32 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 123 / 3e-31 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.016G077700 [exp] 122 / 8e-31 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 121 / 2e-30 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017350 pacid=23140272 polypeptide=Lus10017350 locus=Lus10017350.g ID=Lus10017350.BGIv1.0 annot-version=v1.0 ATGCCTAGGAAGGATTCGGTTGCTTCGAACTCTCTGATTCATTGTTATGTTCAGAATGGTCGATCCGAGGAAGCTGTTGAATTGCTTAGGACTTTGAGTC TGGATCCTTGTAAAGAATCAGAATCAAGCATTGATGAATTTGTGTTAGCTACTGTGATTGGAGCGTGCACTAACCTCGAAGCTTTGAATTGGGGCAAGCA AATTCATGCCCGGATTCTGAGCCATGGTGTGGAGCTTGATCCAGTGATGGCTAGCTCACTGACCAATCTTTACGCTAAGTGCGGCTATTTCCAGAGTGCG AGTTTCGTTCTGAACAAGGACGATTTCTCTCTGTCTGCATTGATCTCCGAATATGCAAATGCTGGCAGATTCGAAGATGCTCGAAGACTACTTGACCGGA CGAGCAAAGTATTCGCTAGAGCAACTAGGATCGTCCTCGAATCAAATCCTGCTGTTTCCACTTCACTGATAGATTTCTACTGCAAATGTGGCTTCGTAGA GACTGGGAGGAAGTTATTCGATGCAGTTAAGCTCGATGATGACCCCGCGTGTTGGAATTCGATGTTGATGGGATACGCTACCAACGGACAAGGATCAGAA GCACTTTCTTTATTCAACACAATGAGGAATCATTCCCCTGTGTGGCCAAGTAACATCACATTCACGGCAGTTCTGTCAGCTTCTGATCATTGTGGCATGA TGGTCATATGTCTTTCGAACCGGATACGACAATGTGGTGCTCAACATGTTCATGGAGAGGATAAGCTTGGAGAAGAAATCGCGAGACGGATCATCGAGCT TGATCCGGAGGAGAATGCCAGTAGTGCGTATATACAACTGTCTGGAATATTTGCCAATACTGGGAAATGGGAGAGTTCATCCTTCATTCTGGAAGTTGAT GCAAGAGAAGGAAATAAAGAAGGTTCAAATAAAGAAGGTTCCTGGTTATAG
AA sequence Show only first row Show all	>Lus10017350 pacid=23140272 polypeptide=Lus10017350 locus=Lus10017350.g ID=Lus10017350.BGIv1.0 annot-version=v1.0 MPRKDSVASNSLIHCYVQNGRSEEAVELLRTLSLDPCKESESSIDEFVLATVIGACTNLEALNWGKQIHARILSHGVELDPVMASSLTNLYAKCGYFQSA SFVLNKDDFSLSALISEYANAGRFEDARRLLDRTSKVFARATRIVLESNPAVSTSLIDFYCKCGFVETGRKLFDAVKLDDDPACWNSMLMGYATNGQGSE ALSLFNTMRNHSPVWPSNITFTAVLSASDHCGMMVICLSNRIRQCGAQHVHGEDKLGEEIARRIIELDPEENASSAYIQLSGIFANTGKWESSSFILEVD AREGNKEGSNKEGSWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	0	1
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	1.0	0.9236
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	2.0	0.8554
					Lus10008111 [exp]	3.2	0.8131
AT1G71760			unknown protein		Lus10004010 [exp]	4.2	0.8711
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	5.5	0.8693
AT1G64600			methyltransferases;copper ion ...		Lus10017311 [exp]	6.6	0.7432
					Lus10006808 [exp]	6.7	0.8524
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	6.9	0.8211
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	7.5	0.8311
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	7.7	0.8474

Compare expression of checked genes

Lus10017350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.