Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 244 / 1e-74 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 224 / 8e-66 NAC ANAC014 NAC 014 (.1.2) AT3G49530 181 / 2e-51 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 170 / 2e-47 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT1G65910 151 / 2e-39 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 140 / 3e-38 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10500 144 / 3e-37 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G46590 139 / 3e-37 NAC ANAC096 NAC domain containing protein 96 (.1) AT5G17260 141 / 2e-36 NAC ANAC086 NAC domain containing protein 86 (.1) AT5G04410 139 / 1e-35 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010148 [exp] 725 / 0 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 447 / 1e-152 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 447 / 1e-152 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 178 / 2e-49 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 176 / 9e-49 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 142 / 2e-38 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 141 / 6e-38 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 145 / 3e-37 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 146 / 4e-37 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149300 [exp] 332 / 2e-106 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 316 / 1e-100 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.012G007500 [exp] 216 / 6e-63 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 191 / 8e-54 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.005G200100 [exp] 143 / 6e-37 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.003G089800 [exp] 139 / 9e-37 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.015G030200 [exp] 135 / 1e-36 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 142 / 4e-36 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.010G174600 [exp] 135 / 1e-35 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.004G081000 [exp] 140 / 2e-35 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10017353 pacid=23140219 polypeptide=Lus10017353 locus=Lus10017353.g ID=Lus10017353.BGIv1.0 annot-version=v1.0 ATGATGTTACCAAAATCGAATCGAATCCCTAATATTTCATTCACGTCCCTCTCTCGATTGTGTGCAGGTCTATCCGTAATCAAGACGAATGATCCGGAGT GGTTCTTCTTCTGCCCTCGCGACCGCAAGTACCCTAACGGGTGCCGTTCCAACAGGGCGACCGAGGCTGGATACTGGAAAGCTACGGGGAAGGACAGGAC GATCAAGTCCAGGAAGTCCAGCTGTGGCTCTAAATCGATCGGGATGAAGAAGACCTTGGTCTTCTACAGAGGACGTGCTCCGAGAGGTGAGCGATCTAAC TGGATTATGCATGAGTACCGCGCTACAGAGGAAGATCTCGATGGTAATGCGCCTGGCCAGGCTGCTTTTGTTCTTTGCCGCTTGTTTCGGAAGCCTGAGT TGACGAAGCCGATCGGTGCGAAAAATGATGAAATGGAGGAGCAGACCGAATACTCTCCTTCCGCCACCAAGTCTGATGATGCATCCTTTGATGTAGTTCA GGAGACTGCAAATTCTTCTGGTATGGATTTAGGGAAACAAACCGATGCTATAGTACCTGCAGACAGCAATAGTTACATGAATTCGGATGTAGAAGATCTT ACTGTGGAGGCAAACGGAGCATTGGATTACAAAGAGTTCTCTTATGGAGATCTAGGACGGCTAAGTGGGGACTCTCATTCTTATGACATTGACTTTGGTA ACGACCTCAGCAGTTTTCTGGATGGCACGAATGAACAAGATGCATATCTCACTGACTTGCTTGACGAGGTGTTCCATAATCATGGTGGTGAGTTGTCTTT TGAGGAAGCCTCCAGTAGAATGGACAGTGAGTCGATGCTTGAGGATTTCAATGCAGCTGACTGTAATATATACAGCAACGTGGCTGCTAAAATGACTCAA CAGGAACAGATCGGAACAGTTTCTGGACTGTCCAGTGCACAAGCACCATTCTTTGACAGAGAAGTGGGAAGCATGAATCTTGGTGACCCTCGCGATACTT TTGTCAGGCAAGATGCTCATTATGCGGATCCTTTCACAAACACATCCTTTGGGATGTTCCACCCTGTGGAGAACTATGGAAGCTTCAGCGATAATCTTGT TGGTGGAACTGGAATCAAGATCAGAACACGTCCACCTGAAGTTCGACCACCGTCGAAGATCTTGATTTCTCAGGGCACTGCTCCAAGGAGGCTACTATTC CAGACAAAACTCTCAAGAGGGCAGTGTCGAAACTGCGTGGATGGTGAAGATGCAATGCAATCGTCAGTAACCAAGAACCAAGATGCTGAGGAAACCAATC AAACTCGCGACGAGCAACCGAAAGAAGGCTGGGTGGGCAAGCTCAGGAGAAGGATGGTGAGAACCCTGAGTGAAGTAGGCTGTGTAAGTAATGGGAAGAG TGGTTCAGAATCAGCATGGGTGATCGGCGTAACGGGAGCCGCCTTTCTGGTGGCGGGTACTGCAGTTGAGATCTGGAGATGTTTGTGGGCGTGA
AA sequence Show only first row Show all	>Lus10017353 pacid=23140219 polypeptide=Lus10017353 locus=Lus10017353.g ID=Lus10017353.BGIv1.0 annot-version=v1.0 MMLPKSNRIPNISFTSLSRLCAGLSVIKTNDPEWFFFCPRDRKYPNGCRSNRATEAGYWKATGKDRTIKSRKSSCGSKSIGMKKTLVFYRGRAPRGERSN WIMHEYRATEEDLDGNAPGQAAFVLCRLFRKPELTKPIGAKNDEMEEQTEYSPSATKSDDASFDVVQETANSSGMDLGKQTDAIVPADSNSYMNSDVEDL TVEANGALDYKEFSYGDLGRLSGDSHSYDIDFGNDLSSFLDGTNEQDAYLTDLLDEVFHNHGGELSFEEASSRMDSESMLEDFNAADCNIYSNVAAKMTQ QEQIGTVSGLSSAQAPFFDREVGSMNLGDPRDTFVRQDAHYADPFTNTSFGMFHPVENYGSFSDNLVGGTGIKIRTRPPEVRPPSKILISQGTAPRRLLF QTKLSRGQCRNCVDGEDAMQSSVTKNQDAEETNQTRDEQPKEGWVGKLRRRMVRTLSEVGCVSNGKSGSESAWVIGVTGAAFLVAGTAVEIWRCLWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	0	1
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	1.0	0.8922
AT5G59960			unknown protein		Lus10005446 [exp]	4.9	0.8495
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	12.2	0.8441
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	14.1	0.8570
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	16.8	0.8422
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	23.4	0.8389
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	24.1	0.8498
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	26.3	0.8241
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	27.6	0.8391
AT1G53710			Calcineurin-like metallo-phosp...		Lus10036645 [exp]	30.2	0.7819

Compare expression of checked genes

Lus10017353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.