Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72680 540 / 0 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT2G21890 322 / 5e-108 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 319 / 5e-107 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 317 / 2e-106 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G39330 316 / 5e-106 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37980 300 / 1e-99 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 276 / 1e-90 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT3G19450 263 / 3e-85 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 249 / 8e-80 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT1G32780 84 / 8e-18 GroES-like zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010149 [exp] 716 / 0 AT1G72680 550 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10005611 [exp] 302 / 2e-100 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002089 [exp] 301 / 2e-100 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 301 / 6e-100 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10023268 [exp] 298 / 7e-99 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10035956 [exp] 296 / 2e-98 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10019811 [exp] 296 / 5e-98 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 295 / 6e-98 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10025706 [exp] 293 / 7e-97 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148100 [exp] 580 / 0 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148200 [exp] 570 / 0 AT1G72680 561 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024300 [exp] 518 / 0 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.003G196700 [exp] 506 / 0 AT1G72680 469 / 1e-166 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023360 [exp] 489 / 3e-174 AT1G72680 492 / 1e-175 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023300 [exp] 484 / 2e-172 AT1G72680 489 / 1e-174 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024250 [exp] 472 / 2e-167 AT1G72680 452 / 4e-160 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.001G307200 [exp] 334 / 4e-113 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 322 / 3e-108 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 322 / 3e-108 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017354 pacid=23140191 polypeptide=Lus10017354 locus=Lus10017354.g ID=Lus10017354.BGIv1.0 annot-version=v1.0 ATGAGTTCTGAGAATGCGAAAGAGGATTGCCTTGCATGGGCTGCGAGAGATCCGTCTGGAGTTTTATCCCCCTACAAGTTCAGCCGTAGGGCAACAAGGG ATGATGATGTTTCTCTAAGAATAACACACTGTGGAGTATGCTATGCTGATGTTGTTTGGACTCGGAATAAACATTATGATTCCAAGTATCCGTTGGTGCC TGGGCATGAAATCGTTGGGATTGTACAAGAGGTTGGCCGCAACGTGAGCCAATTGAAACCTGGTGACCATGTTGGAGTAGGCACTTATGTTAACTCCTGC AGGGAGTGCGAATTTTGTGATGACAGAGATGAAGTCAACTGTGTAAAAGGTTCTGTTTTCACCTTTAATGGTCTTGATTCCGATGGCACCATCACAAAAG GTGGATATTCCAGCCACATTGTTGTTCATGAAAGGTTTGAGTTTCAGCTTCCTTTTCAGATGCTAGTTTGTTCATTGAGAGTAGTGGCAGAAAGTGTTCC AAAATACTGCTACAAGATACCTGATGGATATCCTTTGGCAATGGCTGCTCCTTTGCTATGTGCTGGAGTTACTGTTTACAATCCCATGGTTCGTCATAAC ATGAATCAGCCCGGCAAATCTTTGGGAGTGATTGGGCTTGGCGGTCTTGGCCACATGGCAGTGAAGTTCGGGAAAGCTTTTGGATTGCAGGTCACAATAT TCAGCACAAGTGCATCAAAAAAAGAGGAAGCCTTGAGCGTACTTGGTGCTGACAGGTTTATCGTCTCCTCAGACGAAGAGCAGATGAAGGTCTTATCGAA ATCACTGGACTTCATAATCGACACTGCATCCGGCGACCACCCGTTCGATCCGTACATGTCTCTTCTCAAGACTCGGGGTGTTCTTGTCCTTGTCGGTTTC CCCGGTGAAGTGAAATTCAGTCCTGCGAACCTTATTCTCGGTACTAGAACCGTTGCAGGGAGTGTAACGGGCGGAACAAAGGTGACGCAAGAGATGCTGG AGTTCTGTGCTGCAAATAAGATCTATCCCAAGACGGAGGTGATTCCGATTCAGGATGTCAACGAAGCGATCGAGAGGCTTATCAATAGAGATGTGAAGTA TCGCTTCGTGATAGATATCGAGAACTCGTTGAAGTGA
AA sequence Show only first row Show all	>Lus10017354 pacid=23140191 polypeptide=Lus10017354 locus=Lus10017354.g ID=Lus10017354.BGIv1.0 annot-version=v1.0 MSSENAKEDCLAWAARDPSGVLSPYKFSRRATRDDDVSLRITHCGVCYADVVWTRNKHYDSKYPLVPGHEIVGIVQEVGRNVSQLKPGDHVGVGTYVNSC RECEFCDDRDEVNCVKGSVFTFNGLDSDGTITKGGYSSHIVVHERFEFQLPFQMLVCSLRVVAESVPKYCYKIPDGYPLAMAAPLLCAGVTVYNPMVRHN MNQPGKSLGVIGLGGLGHMAVKFGKAFGLQVTIFSTSASKKEEALSVLGADRFIVSSDEEQMKVLSKSLDFIIDTASGDHPFDPYMSLLKTRGVLVLVGF PGEVKFSPANLILGTRTVAGSVTGGTKVTQEMLEFCAANKIYPKTEVIPIQDVNEAIERLINRDVKYRFVIDIENSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	2.0	0.9276
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	8.5	0.9283
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	9.4	0.9045
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	10.2	0.9356
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	15.5	0.9185
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	15.7	0.9319
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	23.2	0.9213
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	26.3	0.9251
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	29.1	0.9162
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	31.6	0.9210

Compare expression of checked genes

Lus10017354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.