Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73940 158 / 3e-50 unknown protein AT5G49410 91 / 8e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010150 [exp] 228 / 5e-77 AT1G73940 136 / 4e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453400 [exp] 155 / 3e-49 AT1G73940 141 / 1e-43 unknown protein Potri.005G118900 [exp] 96 / 5e-26 AT5G49410 188 / 9e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017355 pacid=23140142 polypeptide=Lus10017355 locus=Lus10017355.g ID=Lus10017355.BGIv1.0 annot-version=v1.0 ATGGCCTGGTGGTTGACTGGCGCCGGCGGAAGCGCCGGCGGCGCGATTAAGAGTGCTTTGGTAAGGTATTTCTCCAGGGAACGCGCCGTCAATGTCAGAA AGATAAACCCTAAGGTTCCTTTCCCGGAAGCTTTTGCCATCTCTGAGTCACTTTACAACATCATAAAGAAGAACGGACCTCTCTCGATTGGCAACACCTG GACTCTCGCTCAGGAATCTAACGTGGATGGATTGGCGAGCAAAACACACATGAAAATCATGCTCAAGTGGATGAGGGGACGGAGGATGTTGAAGCTGATC TGTAACCATGTTGGCTCCAACAAGAAGTTCATGCACTGCACTCTACCTGAAGAGCCGCAAACACAAAGCGATTCCGCTTCCACTGCACAACCACCATTGA AGCTCAAGACCCAGAAGAAGAAGAAGCTCACCGGGAAGCACAAAAAGAGTCGCAGCTGA
AA sequence Show only first row Show all	>Lus10017355 pacid=23140142 polypeptide=Lus10017355 locus=Lus10017355.g ID=Lus10017355.BGIv1.0 annot-version=v1.0 MAWWLTGAGGSAGGAIKSALVRYFSRERAVNVRKINPKVPFPEAFAISESLYNIIKKNGPLSIGNTWTLAQESNVDGLASKTHMKIMLKWMRGRRMLKLI CNHVGSNKKFMHCTLPEEPQTQSDSASTAQPPLKLKTQKKKKLTGKHKKSRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73940			unknown protein		Lus10017355 [exp]	0	1
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	2.8	0.8605
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	5.7	0.8512
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	8.0	0.8382
AT5G04800			Ribosomal S17 family protein (...		Lus10021307 [exp]	12.6	0.8208
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	12.6	0.8363
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10015609 [exp]	15.4	0.8315
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10022810 [exp]	15.7	0.8450
AT1G73940			unknown protein		Lus10010150 [exp]	16.6	0.8117
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	17.9	0.8351
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	18.7	0.8566

Compare expression of checked genes

Lus10017355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.