Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33230 409 / 2e-143 TMPIT-like protein (.1) AT4G10430 404 / 4e-141 TMPIT-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010151 [exp] 632 / 0 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10008294 [exp] 451 / 3e-159 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10033263 [exp] 369 / 9e-127 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 287 / 3e-96 AT1G33230 327 / 3e-112 TMPIT-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 455 / 6e-161 AT1G33230 486 / 4e-173 TMPIT-like protein (.1) Potri.001G454400 [exp] 441 / 9e-156 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [flax] [poplar] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Lus10017356 pacid=23140203 polypeptide=Lus10017356 locus=Lus10017356.g ID=Lus10017356.BGIv1.0 annot-version=v1.0 ATGGACGGCGGTACAAATTCGGCGGCGGACGAGTCGGCCAGTAAGGTCGAGGAAGAGATTGGAAGAGTAGCTGAAGAGGCGAGGTTGCTGCAGGAATCGG CTTCCTCTCACATCTCCAAGTCATTCAACGACGAGCAATCGCTTCGCCACCGCGCTAATTCTCTCGACTCTTCCATCCGCCGCTGCCGCTCTCTCCTCCG ATCCCTCCTCTCTCGCCGCCAAATCGACAACAAGCTAGCCGACAAGGCAAATTCACTCCCCCAATCCTCTTTTAACGAGCTGCAGAGAGCTAAGTGCGTG ATTTCCGATGGGGACGCTGCCGCTTTTCTTCCTTCTACTCTCCAAGTACTGCATGTGAAGCTTAGTCACCTACTTAGTTCAATCGCTGCAGGTGGCTTTC TGAGGATGTTTCTAGGTCCCATTAACGTGCGTGCCTCTCGTAAAGACGTCCAGTTGAAGGTTAAAGAAGAGTATAACAGTTACAGGGATAGAACTGCCCT TCTGTTTCTTATTTTCCCATCAGCTCTACTAGTTCTAAGGTCCTGGTTGTGGAGTGGATGCTTGCCAGCATTCCCAGTTCAGCTGTATCAGGCGTGGTTG TTGTTCCTGTACACTGGGTTGGCCTTGCGAGAAAACATACTGAGGGTTAATGGAAGCGATATTCGTCCATGGTGGATATACCATCACTACTGTGCTATGA TTATGGCCCTAGTAAGTCTTACGTGGGAAATTAAAGGACAACCCAACTGTGCACAGAAACAGAGGGGAGTCCAACTTTTCTTGCAATGGGCTATGATGCA AGGAGTCGCAATGCTTTTACAGAATCGATATCAACGTCAGAGACTTTATACCCGAATCGCATTGGGGAAGGGTTTCGAGGCATACGTCGGCCTTCAGTTG CTGAGGACTGCATTCGTGAGGGTCGTGACCGAGTGGCAGGTAATATTCTGCGGAGTCATTCTGATCTTCATGGCCGTTGGGAACTTCTCAAACACGGTAC AGACGCTAATGGCGAAGTCCAGGTTCAAAGCGAAGATGAAACGGAGCAAGAGTAAGGCGGAGCTCGATTAA
AA sequence Show only first row Show all	>Lus10017356 pacid=23140203 polypeptide=Lus10017356 locus=Lus10017356.g ID=Lus10017356.BGIv1.0 annot-version=v1.0 MDGGTNSAADESASKVEEEIGRVAEEARLLQESASSHISKSFNDEQSLRHRANSLDSSIRRCRSLLRSLLSRRQIDNKLADKANSLPQSSFNELQRAKCV ISDGDAAAFLPSTLQVLHVKLSHLLSSIAAGGFLRMFLGPINVRASRKDVQLKVKEEYNSYRDRTALLFLIFPSALLVLRSWLWSGCLPAFPVQLYQAWL LFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKGFEAYVGLQL LRTAFVRVVTEWQVIFCGVILIFMAVGNFSNTVQTLMAKSRFKAKMKRSKSKAELD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	2.0	0.8248
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	4.8	0.8268
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	6.5	0.8226
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	8.5	0.7970
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	8.8	0.7960
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	8.9	0.7963
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	16.1	0.7820
AT5G22040			unknown protein		Lus10000457 [exp]	16.9	0.7778
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	19.8	0.7852
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	20.0	0.7916

Compare expression of checked genes

Lus10017356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.