Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33170 948 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 935 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 761 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 743 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 718 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 702 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 599 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 508 / 5e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 506 / 2e-173 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 469 / 8e-159 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010152 [exp] 1266 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 1057 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 761 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 712 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 710 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 709 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 707 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 707 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037180 [exp] 705 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147600 [exp] 1023 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 1014 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 788 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 785 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 776 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 764 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 732 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 730 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 721 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 713 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017357 pacid=23140210 polypeptide=Lus10017357 locus=Lus10017357.g ID=Lus10017357.BGIv1.0 annot-version=v1.0 ATGGTGGGATCGCCAAAGGCACACCAGCTAGAATCAAAGAGAAAGCGCTTAACTTGGATTCTATGCGTTACTGGCCTCTGCATACTGTCCTACATTCTGG GATCATGGCAGCACACAACCACGATGCCACCTTCCCATCTCTCCAAAGCCAACTGCAACCCCAACGGCGATGGTAAAAATCCATCTACGTTAACATCAAC GATCGACTTGGATTTCGAAAGCCACCACCAGATCGAGATCAACAGTTCGGGGACGAAAAAGGACGACTTCCCGCCTTGCGACATGTCCTACAGCGAGTAC ACTCCGTGCCAGTACCCTCCGAGGGGTAGGCGGTTCGATAGGGACATGTTGAAGTACAGGGAGAGGCATTGTCCAGCTAAGAACGAGCTGTTGTTCTGTT TGATACCGGCTCCTCCGAATTACAAGACGCCTTTCAAGTGGCCGCAGAGCCGCGACTATGCTTGGTATGATAATATTCCGCACAAGGAGCTTAGCATTGA GAAGGCGATACAGAACTGGATCCAGGTTGAGGGCGAGCGGCTCAAGTTCCCCGGTGGCGGGACCATGTTCCCCCGTGGCGCGGATGCTTATATTGACGAC ATTAACGAGCTTGTCCCGCTTAGCGGTGGTGCCATTAGGACCGCTGTCGACACTGGATGTGGTGTTGCAAGTTGGGGTGCGTACCTACTCAAGAGGGACA TCATAGCGATGTCATTCGCGCCACGAGACACCCACGAAGCTCAAGTCCAGTTCGCGCTCGAGAGAGGAGTTCCGGCCATGATCGGTGTCATGGGATCTCA GAGGCTTCCTTACCCTGCAAGAGCTTTCGACATGGCTCACTGCTCTCGCTGCTTGATTCCCTGGTTCAAATACGATGGGATGTATCTGATTGAAGTGGAC AGAGTGCTGAGACCAGGAGGTTACTGGGTTCTGTCAGGACCTCCGATCAACTGGAAGAAATACTGGAAAGGCTGGGAAAGGAGTAAACAGGATTTGAATC AAGAACAGGATTCGATCGAGGACGTGGCGAAAAGGCTGTGCTGGAAGAAAGTTGCCGAGAAGAACGATCTGTCGATTTGGCAGAAGCCACTGAACCACTT TGACTGTCTGGAGGATAGGAAGCTCTACCAGAGGACTCCTCATATGTGCAAGTCTGACAATCCTGATGCAGGCTGGTACAAGAACATGGAGACATGCATA ACCCCTCTACCAGAAGTAACCAACCCGGACGAAGTCTCCGGCGGCCCGTTGGAAAATTGGCCAGCGCGTGCATTCGCAATCCCACCTCGAATCTCCACCA ATTCAATCCCAGGAATCACAATTGAGAAATTCAAAGAAGACAACGAGCTATGGGAACAGAGATTAAACCACTACAAGCAAATCATCAGCCCACTGTCACA AGGTCGCTACCGCAACGTGATGGACATGAACGCCTACCTGGGAGGATTCGCGGCGGCGCTAATCAACTACCCGGTCTGGGTAATGAACGTGGTTCCGGTC GACTCGAACCACGATACTCTGGGAGCGATCTACGAGCGAGGGTTCATCGGGAGCTACCAGAACTGGTGCGAGGCGTTCTCGACGTATCCGAGGACGTACG ATTTCATCCACGCCGGCGGGGTATTCAGCATTTATCAGGATCGGTGCGACGTCGTTTTGATCCTGCTGGAGATGGATCGTATTCTGCGGCCGGAAGGGAC GGTGGTGTTTAGGGATACGGTGGATGTTTTGGTGAAGGTGGAGAAGGTGATTAGTCGGATGAGGTGGAAGAGCCGGATCGTTGACCATGAGAGTGGACCG TTTAATCCGGAGAAGATACTGGTTGCGACTAAGGAGTACTGGACTGCTGACGGTGGTGGTGATTCTCCGACGAAGCAACGTTAG
AA sequence Show only first row Show all	>Lus10017357 pacid=23140210 polypeptide=Lus10017357 locus=Lus10017357.g ID=Lus10017357.BGIv1.0 annot-version=v1.0 MVGSPKAHQLESKRKRLTWILCVTGLCILSYILGSWQHTTTMPPSHLSKANCNPNGDGKNPSTLTSTIDLDFESHHQIEINSSGTKKDDFPPCDMSYSEY TPCQYPPRGRRFDRDMLKYRERHCPAKNELLFCLIPAPPNYKTPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERLKFPGGGTMFPRGADAYIDD INELVPLSGGAIRTAVDTGCGVASWGAYLLKRDIIAMSFAPRDTHEAQVQFALERGVPAMIGVMGSQRLPYPARAFDMAHCSRCLIPWFKYDGMYLIEVD RVLRPGGYWVLSGPPINWKKYWKGWERSKQDLNQEQDSIEDVAKRLCWKKVAEKNDLSIWQKPLNHFDCLEDRKLYQRTPHMCKSDNPDAGWYKNMETCI TPLPEVTNPDEVSGGPLENWPARAFAIPPRISTNSIPGITIEKFKEDNELWEQRLNHYKQIISPLSQGRYRNVMDMNAYLGGFAAALINYPVWVMNVVPV DSNHDTLGAIYERGFIGSYQNWCEAFSTYPRTYDFIHAGGVFSIYQDRCDVVLILLEMDRILRPEGTVVFRDTVDVLVKVEKVISRMRWKSRIVDHESGP FNPEKILVATKEYWTADGGGDSPTKQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10017357 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	5.1	0.8790
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	6.9	0.8499
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	12.6	0.8183
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	15.7	0.8109
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	16.7	0.8448
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	21.7	0.8117
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	23.0	0.8166
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	23.2	0.8238
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022241 [exp]	30.4	0.7430
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	33.2	0.7895

Compare expression of checked genes

Lus10017357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.