Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10380 428 / 3e-152 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 320 / 2e-109 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT5G37820 201 / 2e-63 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 193 / 3e-60 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G18910 190 / 6e-59 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 187 / 7e-58 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT1G31885 183 / 9e-56 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 160 / 3e-47 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 143 / 8e-41 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G16240 108 / 8e-28 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010153 [exp] 521 / 0 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 443 / 4e-158 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10024066 [exp] 310 / 1e-105 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10041674 [exp] 246 / 5e-82 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10029274 [exp] 195 / 6e-61 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 190 / 6e-59 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10041675 [exp] 176 / 2e-54 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1) Lus10007322 [exp] 164 / 6e-50 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10020929 [exp] 164 / 1e-48 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455000 [exp] 426 / 1e-151 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 426 / 2e-151 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 323 / 5e-111 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G046800 [exp] 319 / 4e-109 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G072100 [exp] 196 / 3e-61 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 194 / 1e-60 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.004G063000 [exp] 190 / 5e-59 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 185 / 5e-57 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 181 / 3e-55 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 163 / 2e-48 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10017358 pacid=23140181 polypeptide=Lus10017358 locus=Lus10017358.g ID=Lus10017358.BGIv1.0 annot-version=v1.0 ATGCCGGAATCTGAAGGAGGAGGGACGCCGGTGGCGTCGGCTCCGGCGACTCCGGGGACACCGGGGGGTCCTCTGTTTTCGGGGCAGAGGGTTGACTCGC TGTCGTATGAGAGGAAGTCGATGCCGAGGTGTAAGTGCTTTCCGGTGACTATAGGAGATGACGTGGACAGTACTCCGACGTGCTTCACTCATTTCCCGAC TCCGTCGGCCTCTGATATCTCTCTTACTCGCAAGGTAGGGGCAGAGTTCGTCGGAACATTCATACTAATCTTCGCGGCAACAGCAGGGCCCATCGTCAAC CAAAAGTACAACGGCGCGGAGACCCTGATCGGAAACGCCGCCTGCTCCGGCCTAGCCGTGATGATCATCATACTGTCGACGGGACACATCTCCGGCGCCC ATCTGAACCCTGCTCTCACCATCGCATTCGCAATCCTCCGTCACTTCCCTTGGGTTCACGTCCCGGCCTACATTCTCGCCCAAGTGTCCGCATCCATCTG CGCCTCCTTCGCTCTCAAGGGCGTCTTCCACCCCTTCATGTCCGGCGGAGTCACCGTTCCTTCCGTCAGCACCGGCCAGGCTTTCGCGCTCGAGTTCATC ATCACTTTCGTTCTCTTGTCCGTCGTCCCCGCCGTGGCTACAGATACTCGTGCGGTCGGTGAGTTGGCCGGAATAGCCGTTGGAGCCACCGTCATGCTCA ACATTCTTGTTGCAGGACCATCAACCGGTGCATCGATGAATCCAGTGAGGGCGCTGGGACCAGCAGTGGCAGCAGAGAACTACAGGAAGATCTGGATATA CATGATTGCACCACCTCTCGGTGCAGTCGCCGGAGCAGCTACCTACACTGCTGTCAAACTGCGCGATACCGATGCTGATCCTCCTCGTCCGGTTAGGAGC TTCCGTCGCTAG
AA sequence Show only first row Show all	>Lus10017358 pacid=23140181 polypeptide=Lus10017358 locus=Lus10017358.g ID=Lus10017358.BGIv1.0 annot-version=v1.0 MPESEGGGTPVASAPATPGTPGGPLFSGQRVDSLSYERKSMPRCKCFPVTIGDDVDSTPTCFTHFPTPSASDISLTRKVGAEFVGTFILIFAATAGPIVN QKYNGAETLIGNAACSGLAVMIIILSTGHISGAHLNPALTIAFAILRHFPWVHVPAYILAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFI ITFVLLSVVPAVATDTRAVGELAGIAVGATVMLNILVAGPSTGASMNPVRALGPAVAAENYRKIWIYMIAPPLGAVAGAATYTAVKLRDTDADPPRPVRS FRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10017358 [exp]	0	1
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	2.2	0.8506
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	5.5	0.8436
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	31.8	0.8403
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	37.0	0.7906
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	76.0	0.7752
					Lus10011203 [exp]	92.0	0.7481
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	93.3	0.7453
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	115.4	0.7655
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	120.4	0.7570
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	121.2	0.7335

Compare expression of checked genes

Lus10017358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.