Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19990 590 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010154 [exp] 762 / 0 AT3G19990 583 / 0.0 unknown protein Lus10038848 [exp] 635 / 0 AT3G19990 536 / 0.0 unknown protein Lus10028680 [exp] 136 / 3e-37 AT3G19990 144 / 1e-40 unknown protein Lus10028681 [exp] 119 / 1e-32 AT3G19990 110 / 4e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001200 [exp] 603 / 0 AT3G19990 632 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017359 pacid=23140244 polypeptide=Lus10017359 locus=Lus10017359.g ID=Lus10017359.BGIv1.0 annot-version=v1.0 ATGCCACCGATTAACAGCAGCAACAACAATAATTCCACTACCACAGCAACCAGCGGCGTAGCTGTCCACCACGACGAGCTCCAGTCGATCTTAGCCGCAG CTCGACCTTTCCTCCGAGGCGAGCTCGAGTCCGTCGACGAAAAACTACCCCGCCTGGTGAGCGTTCTGCGTTCGGTCGGCGCAGGGGAGTGCTGGCACAA GCACGGCAGCTTCTTGGATCACCTCGTCGACATCTACCGCATCCTCAAGCTATGGGGAGCTCCGGAATCCGTCTGCCTCTGCGGCCTTTTCCACTCCGCC TACTCCAACTCGTACGTCAACCTCGCGATCTTCGACCCTTCCACCGGCCGCGACGTTGTCCGCCGCCACGTGGGCGACACCGCCGAGAGGCTGATCCACC TGTTTTGCATCGTGCCTCGCCAGTCTCTGATCCACGACGATCTCCTGTTCAACTACCCCGACGACTCCGAACTCCGCCGCCACCTAGTTGAATCAGAAAC TTCTCTGCTGAACGCGAAGGAGAGAGGGGAATTCGATGCAGGGGAGGAGTGGAGGGTAAAGCTGAATTCGTTATTGCCGGCTGATGGAGTTAAAGTTAAG CATATTAGGACCGGAGATGAGGTGGAGGTGTCCAGAAGAGTGGTGGCTACTTTCTTGCTGATGACCATCGCCGATTTCAGCGATCAATCGTTCGGATTCC AGGACGAGTTGTTCGAAAATTCGAACGGGAGATTGGAATTCTCCGGGAACAAATTCAACGCTCTCTGGCCAGGGGACGGCAAGCCAGGGCTGTGGATCAA CTCAATTTCGAGGATGGGAGCTGTGTACACGCTGATAGTCAGAGAGGAGGAGATAATTAGGGCACAGAATGGCCAGAGGAAGAGAGTTGGAGTGGAGGAT GAAGAACTGGATCTGGTGATGCCGCCGATTCTAGAGAAATGCACGAGGATTGTGGATTCGGAGGAGCAAATCGAAGCGAGGGAGCTTTACTGGGAGGCGG TTTGCGGAAAGGGAACGGCGGTGGCGGCGGAGGAGATGTTGGTGAAGAGTATTGAGAAGAATCGGTTCGTCGGAGAGCCGCATGTGGTGGTGGCGCAGTT GTATTTGGGGCAAGGGAGGTTCGATGAAGCTGAAAGGGAGGCAGAGACTGGACTGAGGCTGATGCTGGAGTGGGGGAGTCCGTGGGACAAGAGGACTTCT TGGGAAGGTTGGGTTGCTTGGGCTCGGGTTTTGGTTATGAAGGCTAAAGAGAAGTCTTGGCCCAACACTTCTTGGGGCATCCTTAATTTAGGCCTTGTCA AATGA
AA sequence Show only first row Show all	>Lus10017359 pacid=23140244 polypeptide=Lus10017359 locus=Lus10017359.g ID=Lus10017359.BGIv1.0 annot-version=v1.0 MPPINSSNNNNSTTTATSGVAVHHDELQSILAAARPFLRGELESVDEKLPRLVSVLRSVGAGECWHKHGSFLDHLVDIYRILKLWGAPESVCLCGLFHSA YSNSYVNLAIFDPSTGRDVVRRHVGDTAERLIHLFCIVPRQSLIHDDLLFNYPDDSELRRHLVESETSLLNAKERGEFDAGEEWRVKLNSLLPADGVKVK HIRTGDEVEVSRRVVATFLLMTIADFSDQSFGFQDELFENSNGRLEFSGNKFNALWPGDGKPGLWINSISRMGAVYTLIVREEEIIRAQNGQRKRVGVED EELDLVMPPILEKCTRIVDSEEQIEARELYWEAVCGKGTAVAAEEMLVKSIEKNRFVGEPHVVVAQLYLGQGRFDEAEREAETGLRLMLEWGSPWDKRTS WEGWVAWARVLVMKAKEKSWPNTSWGILNLGLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19990			unknown protein		Lus10017359 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	1.4	0.8627
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	4.0	0.8547
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	11.2	0.8202
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	11.4	0.8660
AT1G67340			HCP-like superfamily protein w...		Lus10006418 [exp]	14.0	0.7599
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	14.3	0.8437
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	15.5	0.8304
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	18.1	0.7951
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	18.7	0.8318
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	20.1	0.8243

Compare expression of checked genes

Lus10017359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.