Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20015 455 / 3e-157 Eukaryotic aspartyl protease family protein (.1) AT3G18490 288 / 8e-92 Eukaryotic aspartyl protease family protein (.1) AT1G25510 281 / 4e-89 Eukaryotic aspartyl protease family protein (.1) AT1G01300 271 / 1e-85 Eukaryotic aspartyl protease family protein (.1) AT3G61820 265 / 3e-83 Eukaryotic aspartyl protease family protein (.1) AT5G10770 185 / 8e-53 Eukaryotic aspartyl protease family protein (.1) AT5G10760 166 / 1e-45 Eukaryotic aspartyl protease family protein (.1) AT2G03200 157 / 1e-42 Eukaryotic aspartyl protease family protein (.1) AT1G79720 145 / 4e-38 Eukaryotic aspartyl protease family protein (.1) AT5G33340 141 / 6e-37 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010157 [exp] 711 / 0 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 270 / 4e-85 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 249 / 1e-76 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 206 / 2e-61 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 165 / 1e-45 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 167 / 6e-45 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 163 / 5e-44 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10041621 [exp] 159 / 4e-43 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 156 / 4e-42 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106300 [exp] 456 / 5e-157 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 450 / 9e-155 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 302 / 2e-97 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 296 / 1e-94 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 258 / 2e-80 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 258 / 4e-80 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 179 / 9e-51 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 174 / 9e-49 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 169 / 4e-47 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 162 / 3e-44 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10017362 pacid=23140146 polypeptide=Lus10017362 locus=Lus10017362.g ID=Lus10017362.BGIv1.0 annot-version=v1.0 ATGCCGCCTTTCCACGCTTCCCGACCAATACCAACACTCCCACTCTTCCTATTCCTACTCTCCCCCCTTCTCGCCTCCGCCGCCACCGCCGCCAACAGTA TCCACTTCCCAGACTTCCAACACTTCAACCTCCGACAGTCGCCGCCGCAATCCAACCTCCACCCACTAAACGACGAAACCAATACCAATTCTGATGGCAG GAAGCTTCGGCTGAACCTCCTCCACCGAGACCAACTGATCCCACACCATCACAACAGAACCATCCAGAAGCTGCTCCACTCCCGCATCCGCCGCGACCGC CACCGCGTTGCTGCAATTCTCCGCCGTCTCAATTCCACCACTAATCAGGAACTATCATCGTATAATGTCGATCATCCTCTTGAATTCGGCACTGAGGTGG TTTCCGGGATGGAGCAAGGCAGCGGGGAGTATTTCGTCCGGATCGGAGTGGGGAGTCCGCCGACGAGCCAGTATATGGTGGTGGACTCCGGTAGCGATAT CGTGTGGGTTCAGTGTAAGCCCTGTTCCCAATGCTATAGCCAGTCGGATCCTCTGTTCGACCCGGAATTTTCAACTTCATTCTCCTCTGTTTCCTGCTCT TCCACTGCCTGCGACCGGCTTGCTGCTGGCAACACGGCCTCCTCCTGCGGATCCGGCCGCTGCCGCTACGAGGTTTCCTATGGGGACGGATCCTACACCA AAGGGACCTTAGCACTCGAGACGATCACCTTCCACGACAGCGCCGTGGTCCACGAGGTAGCCATCGGATGCGGCCACAGCAACCGCGGGATGTTCGTCGG AGCAGCCGGTCTCCTCGGGTTGGGAGGCGGGTCAATGTCGTTCGTCGGCCAGCTGGGCGGCCAAGCCGGTGGAGCATTCACCTATTGCCTAGTCAGCAGG GGATCCTCCTCCGGGTCGGGGTCGCTTGAATTCGGACGGGGATCCGTTCCCGTCGGGGCAGCCTGGATCCCGCTCATCCGAAACCCGAGAGCTCCGAGCT TCTACTACGTCGGACTCTCAGGTCTGGGCGTCGGAGGAGTCCGTGTCCCCATCCCCGAGGACGCATTCCGGCTGACCGACCTAGGAGACGGCGGCGTAGT GATGGACACGGGCACCGCCGTGACCAGACTCCCGGGGGACGCCTACGTGGCATTCAGGGACGCCTTCGTGGCGCAGACACGGGACCTACCGAGGTCAGCT TCCGGAGGGGTGTCGATATTCGACACGTGTTACGATCTGAACGGGTTCGTCACCGTGAGGGTTCCCACAGTGTCGTTCTACTTCTCGGAAGGACCCGTGC TGACCCTCCCGGCGAAGAACTTTTTGATTCCGGTGGACGAAAGCGGAACTTTCTGTCTGGCGTTTGCTGCGTCGGCGTCGAGGCTGTCCATCATCGGTAA CGTACAGCAGCAAGGAATCCAGATATCTGTGGACGGTGCCAATGGATTCGTGGGGTTCGGTCCCAATGTCTGCTGA
AA sequence Show only first row Show all	>Lus10017362 pacid=23140146 polypeptide=Lus10017362 locus=Lus10017362.g ID=Lus10017362.BGIv1.0 annot-version=v1.0 MPPFHASRPIPTLPLFLFLLSPLLASAATAANSIHFPDFQHFNLRQSPPQSNLHPLNDETNTNSDGRKLRLNLLHRDQLIPHHHNRTIQKLLHSRIRRDR HRVAAILRRLNSTTNQELSSYNVDHPLEFGTEVVSGMEQGSGEYFVRIGVGSPPTSQYMVVDSGSDIVWVQCKPCSQCYSQSDPLFDPEFSTSFSSVSCS STACDRLAAGNTASSCGSGRCRYEVSYGDGSYTKGTLALETITFHDSAVVHEVAIGCGHSNRGMFVGAAGLLGLGGGSMSFVGQLGGQAGGAFTYCLVSR GSSSGSGSLEFGRGSVPVGAAWIPLIRNPRAPSFYYVGLSGLGVGGVRVPIPEDAFRLTDLGDGGVVMDTGTAVTRLPGDAYVAFRDAFVAQTRDLPRSA SGGVSIFDTCYDLNGFVTVRVPTVSFYFSEGPVLTLPAKNFLIPVDESGTFCLAFAASASRLSIIGNVQQQGIQISVDGANGFVGFGPNVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	0	1
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	1.0	0.9685
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	3.5	0.9311
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10030414 [exp]	12.2	0.9196
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	14.1	0.9297
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	14.1	0.9249
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	15.2	0.9166
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	16.6	0.9153
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	17.0	0.8910
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	18.2	0.9157
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10025684 [exp]	19.3	0.8665

Compare expression of checked genes

Lus10017362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.