Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08540 352 / 1e-120 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010158 [exp] 518 / 0 AT5G08540 387 / 6e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254800 [exp] 374 / 8e-129 AT5G08540 382 / 1e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017363 pacid=23140240 polypeptide=Lus10017363 locus=Lus10017363.g ID=Lus10017363.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCCCTACAACAGCGTCATCTACAGCTGCCTCATCTCAGCTTCTCCAGATTGCGAAACCGAAGCCATGCTTCCCTCCTCCCGTCGTCTCAT TTCCCATTTGTCATTCACGGAGGAGGATATCCGTGGCCGTGGCAGCGAAAGCGAGCAAAAGCAACGATGCGAAGGAAAGCAAGAAAGCTGAAGAGGAAGT GATCGAGGTGGAGGAGGATTTGCCCTGGATTCAGGAGAAGGCGTTGGACTTGGTTGAGTTCACTGGTTCTGTCACTCAGGCGATTCCTGGTCCCAGAGTT GGTAAAAGCTCTCTCCCTTGGATTCTCGCTCTCCCGTTGGCTTACGCCGGCGTTACCTTCGTTATTGCCTTTGTCAAGACCGTCAGAAAGTTGTCTTCTC CGAAAGCCAAGCGAAAGAGACTGGTTGGTAAAAACGCCGAACTGTGTAGATCAGTTGACCAGTTGCTTCTGAGCGGGGGAGATGCATTGGAGCACCACTC AGCTCTGGAAGCGCTAATGAAAAAGACAGGTTTCACTATGGAGGACATTCTGCGCAAGTATATTCGCTATGCACTGAATGAGAAGCCTTTCAATCCGGAG CTGGTTTCCAGCTTGATCCATCTCAGGAGAGCTTCACAGTTGAGTGACGTCCAGATGGCTGAAATTGTGAATCAGATTGCTCGGTTGATTGTGCGAGACA AAGGCCCGGTTGTCATGGAGATGTCAGGCTATACAGAACAGGGTTTTAAGAGAAAACTTGCTGTTCAGACTCTTTTTGGCAAGGTGTTTTATTTGTCTGA GTTACCAGAGTTTTGTTCAAGGGACAGCTCGCTGGTCGTGAAAGAGATATTTGGCGTTACAGAGTACGTCTCGGGTTATCCTTGCTCCTCAAGTAATTTT GATTCGGCTTTCGGGGATGTTTGTAGGTGGAGAATGGCTTGCAATGACGATGCGAATCAACTTAGGGTGCACACCGTGTCCGGAGCTGGTGAGATGGATT CGCTAGAAAAGATGGTGGATGGTGATTATGATTCCGACGAATCTTCTTCCGATGAGGAATCGACATCGCCTGATGATGATAATGCTCCCATGCCTTGA
AA sequence Show only first row Show all	>Lus10017363 pacid=23140240 polypeptide=Lus10017363 locus=Lus10017363.g ID=Lus10017363.BGIv1.0 annot-version=v1.0 MASFPTTASSTAASSQLLQIAKPKPCFPPPVVSFPICHSRRRISVAVAAKASKSNDAKESKKAEEEVIEVEEDLPWIQEKALDLVEFTGSVTQAIPGPRV GKSSLPWILALPLAYAGVTFVIAFVKTVRKLSSPKAKRKRLVGKNAELCRSVDQLLLSGGDALEHHSALEALMKKTGFTMEDILRKYIRYALNEKPFNPE LVSSLIHLRRASQLSDVQMAEIVNQIARLIVRDKGPVVMEMSGYTEQGFKRKLAVQTLFGKVFYLSELPEFCSRDSSLVVKEIFGVTEYVSGYPCSSSNF DSAFGDVCRWRMACNDDANQLRVHTVSGAGEMDSLEKMVDGDYDSDESSSDEESTSPDDDNAPMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08540			unknown protein		Lus10017363 [exp]	0	1
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	1.7	0.9399
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	5.5	0.9101
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	6.5	0.9200
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	8.1	0.9215
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	8.9	0.9078
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	8.9	0.9120
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	9.2	0.9187
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	11.7	0.8820
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	12.0	0.8944
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	12.4	0.9081

Compare expression of checked genes

Lus10017363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.