Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 907 / 0 Pyruvate kinase family protein (.1) AT5G63680 893 / 0 Pyruvate kinase family protein (.1) AT5G56350 800 / 0 Pyruvate kinase family protein (.1) AT4G26390 786 / 0 Pyruvate kinase family protein (.1) AT3G04050 729 / 0 Pyruvate kinase family protein (.1) AT3G55650 699 / 0 Pyruvate kinase family protein (.1) AT3G25960 694 / 0 Pyruvate kinase family protein (.1) AT3G55810 649 / 0 Pyruvate kinase family protein (.1) AT2G36580 401 / 4e-135 Pyruvate kinase family protein (.1) AT3G52990 399 / 2e-134 Pyruvate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010159 [exp] 1011 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 956 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 828 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 819 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 723 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 702 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 549 / 0 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10013450 [exp] 381 / 8e-132 AT5G08570 356 / 1e-122 Pyruvate kinase family protein (.1) Lus10035581 [exp] 392 / 1e-131 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254900 [exp] 926 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 923 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 807 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 803 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 763 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 756 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.006G117400 [exp] 390 / 7e-131 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 390 / 1e-130 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 383 / 4e-128 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 281 / 3e-88 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10017364 pacid=23140151 polypeptide=Lus10017364 locus=Lus10017364.g ID=Lus10017364.BGIv1.0 annot-version=v1.0 ATGGCCAATATCGACATTGATGGCTTGCTGAACGACGATATGGACGGTCGGATTTGTAAGACGAAGATCGTCTGCACTCTAGGTCCAGCTTCTAGATCTG TACCGATGATCGAGAAGCTACTCAAAGCCGGGATGAACGTCGCCCGATTCAACTTCTCCCATGGCTCCCATGAGTACCACCAGGAGACGTTGGATAACCT CCGCATCGCCATGCACAATACTCTCACCCTCTGTGCTGTCATGCTCGACACCAAGGGACCTGAGATTCGAACAGGCTTCCTAAAGGACGAGAAGCCAATC CAGCTGCAAGAAGGCCAAGAGATCACAATCTCTACTGACTACACCATCAAGGGAGATACAGAGACGATTTCCATGAGTTACAAGAAGCTTCCTATGGATG TGAAACCAGGAAACACAATCTTGTGTTCAGACGGCACCATCTCTCTCACTGTCCTGTCGTGTGATCCCAAGTCTGGAACCGTGAGGTGCCGCTGCCAGAA CTCTGCAGTGCTGGGCGAGAGGAAGAATGTCAATCTTCCTGGTGTCGTGGTGGATCTCCCTACTCTTACTGAGAAGGACAAAGAAGACATCCTTCAGTGG GGTGTTCCCAATAGCATTGATATGATTGCTCTCTCCTTTGTCCGCAAAGGATCCGATCTTGTCAATGTCCGCAAGGTCCTTGGTCCTCACGCCAAGCATA TCAAGTTGATGTCTAAGGTCGAGAATCAGGAAGGTGTGATCAACTTCGACGAGATCCTACGCGAGACAGACGCCTTCATGGTTGCCCGTGGCGATCTAGG AATGGAAATCCCAGTCGAAAAGATCTTCCTGGCACAAAAGATGATGATCTACAAATGCAACCTCGTAGGGAAGCCAGTGGTCACCGCAACCCAAATGCTC GAGTCCATGATCAAATCCCCTCGTCCAACTCGCGCAGAAGCCACCGACGTCGCCAACGCAGTCCTCGACGGCACCGATTGCGTGATGCTTAGCGGCGAGA GCGCGGCAGGACTCTACCCGGAACTGGCGGTTAAAACAATGCATAGAATCTGCATAGAGGCAGAATCTTCACTGGACTACAAGACCATATTCAAGGAAAT GATACGGTCGACGCCGCTTCCGATGAGCCCCTTGGAGAGCCTGGCGTCTTCCGCCGTCGGGACGGCGAACAAGGCCAGAGCCAAGCTGATCATCGTCCTG ACACGTGGCGGCACCACGGCGACGCTGGTGGCCAAGTACAGGCCGTCGGTTCCGATTCTGTCCGTGGTTGTGCCGGAGTTGACCACCGACTCGTTCGACT GGGGATGCAGCGACGAGTCCCCGGCTAGGCACAGTCTGATATACAGAGGTTTGATACCTCTGCTGGCGGAAGGTTCTTCCAGGGCTACCGATGCGGAATC GACCAAGGAGATATTGGACGCTGCTCTCAAGTCGGCGATCAAGAAGGGGCTTTGTAACGCCGGAGATGCCGTGGTGGTGCTCCATAGGATCGGTGCGGCG TCTGTTATCAAGATTTGCGTTGCCTAA
AA sequence Show only first row Show all	>Lus10017364 pacid=23140151 polypeptide=Lus10017364 locus=Lus10017364.g ID=Lus10017364.BGIv1.0 annot-version=v1.0 MANIDIDGLLNDDMDGRICKTKIVCTLGPASRSVPMIEKLLKAGMNVARFNFSHGSHEYHQETLDNLRIAMHNTLTLCAVMLDTKGPEIRTGFLKDEKPI QLQEGQEITISTDYTIKGDTETISMSYKKLPMDVKPGNTILCSDGTISLTVLSCDPKSGTVRCRCQNSAVLGERKNVNLPGVVVDLPTLTEKDKEDILQW GVPNSIDMIALSFVRKGSDLVNVRKVLGPHAKHIKLMSKVENQEGVINFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGLYPELAVKTMHRICIEAESSLDYKTIFKEMIRSTPLPMSPLESLASSAVGTANKARAKLIIVL TRGGTTATLVAKYRPSVPILSVVVPELTTDSFDWGCSDESPARHSLIYRGLIPLLAEGSSRATDAESTKEILDAALKSAIKKGLCNAGDAVVVLHRIGAA SVIKICVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08570			Pyruvate kinase family protein...		Lus10017364 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	9.8	0.8850
AT2G16800			high-affinity nickel-transport...		Lus10027851 [exp]	10.2	0.8543
AT2G46170			Reticulon family protein (.1.2...		Lus10041080 [exp]	12.7	0.8390
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	23.7	0.8529
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10019284 [exp]	24.0	0.8261
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	24.2	0.8452
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	28.0	0.8457
AT5G57460			unknown protein		Lus10007487 [exp]	31.0	0.8077
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10019914 [exp]	31.9	0.7999
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	39.0	0.8390

Compare expression of checked genes

Lus10017364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.