Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08380 500 / 3e-177 ATAGAL1 alpha-galactosidase 1 (.1) AT5G08370 399 / 7e-138 ATAGAL2 alpha-galactosidase 2 (.1.2) AT3G56310 367 / 2e-124 Melibiase family protein (.1.2) AT3G26380 75 / 2e-14 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010160 [exp] 662 / 0 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10024401 [exp] 407 / 3e-140 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 395 / 1e-135 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 394 / 2e-135 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 392 / 5e-135 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 389 / 8e-134 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 367 / 7e-125 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 364 / 2e-123 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 360 / 3e-121 AT3G56310 646 / 0.0 Melibiase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255200 [exp] 491 / 2e-173 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.018G152200 [exp] 414 / 4e-143 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 402 / 1e-138 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.004G038100 [exp] 388 / 4e-133 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 371 / 6e-126 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 64 / 7e-11 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 64 / 1e-10 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 58 / 7e-09 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10017365 pacid=23140135 polypeptide=Lus10017365 locus=Lus10017365.g ID=Lus10017365.BGIv1.0 annot-version=v1.0 ATGGGCAGAAGTGGTACAATCACCGGCGAGAGCTACCGTCATTTGCAGCTACTACTGGGGGTCGTACTAGTTCTGTTATCGTCGTCGCCGTGGTGCTCAA TACCTGCTTTTGTTGCTGCAGCGGATCGCCGCAGCCTGCTTGCCAATGGCCTCGGCATGACTCCTCCCATGGGGTGGAACAGCTGGAACCATTTTCACTG CAACATCAGTGAGACCACCATCAAAGCCACTGCGGATGCCTTGGTCTCCAGTGGCCTTGCTAGACTCGGATACACTTATGTCAACATTGATGATTGCTGG GCCGAAAAGACTCGAGACTCCAAGGGAAACCTAAGGCCTAAGAAATCCACATTTCCCTCCGGGATCAAAGCACTGGCGGACTATGTCCATAGCAAAGGTC TCAAACTGGGGATATACTCGGATGCAGGTATGATAACTGCTTCAACGACGGTTCTAAACCAACTGTCAGGTGGGACATTGATTGATATACGTCTGGTTTT GCTACAATGGGGTGATGACGAATTTGCTTACAATCTGTGGAAGAGTAGGTACCCTGTGATGACTCATGCTCTGTTGAAGGCTGGACGACCTATCTACTTC TCCCTTTGTGAATGGGGGGATTTGCATCCAGCTGAATGGGGCTTCAACGTCGGGAACAGTTGGCGAACAACCAACGACATTTCCGATACATGGGAAAGCA TGATCTCGAAAGCGGACGAGAACGAGGTGCACGCGCAGCACGCTCGTCCCGGAGGGTGGAACGATCCGGACATGCTCGAAGTAGGCAACGGAGGTATGAC GGAGAACGAGTACGTCGTCCACTTCAGCCTGTGGTCCATCTCCAAGTCCCCACTCCTCCTCGGCTTCGACGTGAGCAACGTCTCCGCGGTCCGGAACACG TTCCAAATCGTGGGGAACAAGGAAGCGATCGGGATCAACCAAGACCCGCTGGGGATCCAAGCCAAGAAGGTGAGGATGGAAGGCAACAAGGAGATATGGG CTGGTCCGCTCTGGGGCTACCGGTTCGCGGTGTTGCTGCTCAACCGGGCTAACTATGAAGACGGCAGCGATGATTTGTTGACGGCGTTATGGGAGGACGT CGGGATTCCGAGCGGAGCGGTTGTGGAGACTAGGGATGTTTGGGAGGGGAAGACGTTGGGGGAGGTGTTTGGTGGTGGGAATATATCGGCGAGAGTTCCG GCGAGGTCATGCAAGCTCTACATTTTGAAGCCCGTTGCTTGA
AA sequence Show only first row Show all	>Lus10017365 pacid=23140135 polypeptide=Lus10017365 locus=Lus10017365.g ID=Lus10017365.BGIv1.0 annot-version=v1.0 MGRSGTITGESYRHLQLLLGVVLVLLSSSPWCSIPAFVAAADRRSLLANGLGMTPPMGWNSWNHFHCNISETTIKATADALVSSGLARLGYTYVNIDDCW AEKTRDSKGNLRPKKSTFPSGIKALADYVHSKGLKLGIYSDAGMITASTTVLNQLSGGTLIDIRLVLLQWGDDEFAYNLWKSRYPVMTHALLKAGRPIYF SLCEWGDLHPAEWGFNVGNSWRTTNDISDTWESMISKADENEVHAQHARPGGWNDPDMLEVGNGGMTENEYVVHFSLWSISKSPLLLGFDVSNVSAVRNT FQIVGNKEAIGINQDPLGIQAKKVRMEGNKEIWAGPLWGYRFAVLLLNRANYEDGSDDLLTALWEDVGIPSGAVVETRDVWEGKTLGEVFGGGNISARVP ARSCKLYILKPVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10017365 [exp]	0	1
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	9.9	0.9040
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	10.6	0.8238
					Lus10028589 [exp]	11.7	0.9003
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	15.6	0.8791
					Lus10010742 [exp]	22.6	0.8428
					Lus10005655 [exp]	26.5	0.8775
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	26.9	0.8990
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	34.4	0.8847
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	35.5	0.8844
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	37.4	0.8809

Compare expression of checked genes

Lus10017365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.