Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23450 981 / 0 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT4G21540 75 / 8e-14 SPHK1 sphingosine kinase 1 (.1.2.3) AT4G21534 63 / 5e-10 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1) AT5G51290 49 / 9e-06 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010161 [exp] 1279 / 0 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10011246 [exp] 69 / 9e-12 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10027086 [exp] 66 / 9e-11 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018439 [exp] 62 / 2e-09 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10016714 [exp] 53 / 7e-07 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255600 [exp] 1066 / 0 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.008G002100 [exp] 1051 / 0 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.011G043500 [exp] 64 / 2e-10 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3) Potri.004G233300 [exp] 57 / 4e-08 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10017366 pacid=23140158 polypeptide=Lus10017366 locus=Lus10017366.g ID=Lus10017366.BGIv1.0 annot-version=v1.0 ATGCATACGGTGGCTAAAGGTAATACGGCAACCTCAGCAGCAGTCAGCAACCCTACCAATCACCACCAGTCGCTGAGGAGGTTAGGGTTTTGTTCTCAGT TAGCTGCGGGAGGTGGCCAGCACTCTTCCCCGATTGTTTTCCCTGAGAAGCGAAGCAAAAAGGTCAAGTCTTCATGGCCTAAGAGGGTTGAGCTAACCGG CGATCAGCAACCTGACAACAACATAGATGAGTTCAGAATCGACGTTGGAGGGATGCTTCCCTCGGCTGGAGACGAGAAGTCTGATTTGTTGGGGGATGTT GTTTTCTCCGGCAAGCTCGCTTGGGATAAGAGGAAGACATTTCCCAACGCTGATAAACCATCATCCAATGGAAATGCTGCTGCTAAGCAAGCTTCTAGTG GTGATGTTGCTAACCAGGATGCTGTTGACGCTAAGCTTACCAGCAAGGGTTTAATCTGGGGTTCCAATATGTTGCATCTCGACGATGTCATCTCGGTGAC ATATAACGCTGGTCTCAGGCATTTCACCGTCCATTCATATCCCATGAAGAAGGGCTCTTGCGGTCTGTCTTGTTTTATTAAACCCAAGAGGAGTCGCAAA GACCACCGTTTCTTAGCCTCTACCGTGGAGGATGCAGTGCAGTGGGTTGGTGGATTTGCAGATCAGCAGTGCTATGTGAATTGTTTACCCCACCCTATGG CTTCTTCTAAAAAGCAGGCTTCTTCGGAATTAATAATCCCATTTGACACTCCTCCTGAGTTGCTCTTTAAGTGTAAGAACCCTCCTAAAATGCTTGTCAT CCTAAATCCGCGTTCTGGGAGTGGCCGTTCCAGCAAAGTTTTCCATGGCATTGTGGAACCTATATTTAAGCTTGCAGGGTTTAAGTTGGAGGTAGTTAAA ACTACGTCAGCTGGACATGCTAAAAAACTTGCATCTACTGTTGACATCAGCTCTTGTCCTGATGGTATCATATGTGTGGGCGGTGATGGAATTATCAATG AGGTTTTAAATGGCCTGCTTACTAGAGACAACCAGAAAGAAGGCATCTCCATTCCAATTGGAATTATACCTGCTGGTTCTGATAATTCACTTGTTTGGAC TGTCCTGGGAGTACGTGATCCTATATCTGCTGCCATGGCTATTGTGAAGGGCGGTCTCACTGCCACCGATGTTTTTGCTGTTGAATGGATTCAGACTGGT ATCATTCACTATGGGATGACTGTCTCATATTATGGTTTTGTCAGTGACGTGTTGGAACTTTCTGAGAAATATCAGAAACGCTTTGGTCCTCTGCGATACC TCGTTGCTGGGTTTCTTAAGTTCTTATGCATGCCAAAGTACAGCTTTGAGCTGGAATATCTTCCAGCATCAAAAGAAGATCAAGAAGGAAATGGAGATAG GGAAGTAGTGGACATGGCAGATCTCTATACGGATATTATGAGGAGGTCACATACAGACGGCTTGCCTAGAGCATCCAGTTTATCAAGCATCGACTCAATT ATGACACCAAGTCGGGTTTCCGGAGGAGACTTGGATACTACTTGCAGTAGTACTCATGCCAGCACTGAACCATCAGAATATGTCCGTGGCATTGATCCAA AAACGAAACATCTCTCCTCGGGGAGAAGTAACACAACAATCGAACCACCGGAAGTTATCCACCCGCAAAATCCACTTTCCACAACACCAAACTGGCCAAG AACAAGGTCAAAGTCAAGGACCGACAAAGGGTGGGCTGGAACGATTTCTATACAGGATAACTCTAGGTGTTCCTGGGGAAATAACGCTACAAACGACAGA GAAGACATATCTTCTACTTTGTCTGATCCAGGTCCAATTTGGGATGCTGAGCCAAAGTGGGATAGTGAAGCTCGTTGGGCGGCGGTGGAGAATCCTATTG AATTGCCAGGACCGTCAGATGATCTAGAGTCTGGACTGAGGAGGGAACCGGTTCCTAGATTTGAAGAGAAATGGGAATTCCGAAAGGGACAATTTTTAGG GATCCTGGTGTGCAATCATGCTTGCAGAACAGTTCAGAGTGCTCAGCTAGTAGCACCAAAGGCTGAGCCTGATGATAGTACCTTGGATTTGGTGTTGGTT CATGGCGGAGGGCGATTAAGGTTGCTGAGATTTTTCTCACTGTTACAGATGGGCAAAGGCGAACATCTCTCGCTTCCGTATGTGGAATACATAAAGGTAA AGTCAGTGAAGATAAAGTCAGGGAAGCAGAGCCACATTGGATGCGGGATCGATGGGGAGCTTTTCCCATTGAACGGGCAAGTAATATCGTCGCTGTTGCC GGAACAATGCAGACTTATCGGTCGGCAGGCGGATCATACAAAGTGTTGA
AA sequence Show only first row Show all	>Lus10017366 pacid=23140158 polypeptide=Lus10017366 locus=Lus10017366.g ID=Lus10017366.BGIv1.0 annot-version=v1.0 MHTVAKGNTATSAAVSNPTNHHQSLRRLGFCSQLAAGGGQHSSPIVFPEKRSKKVKSSWPKRVELTGDQQPDNNIDEFRIDVGGMLPSAGDEKSDLLGDV VFSGKLAWDKRKTFPNADKPSSNGNAAAKQASSGDVANQDAVDAKLTSKGLIWGSNMLHLDDVISVTYNAGLRHFTVHSYPMKKGSCGLSCFIKPKRSRK DHRFLASTVEDAVQWVGGFADQQCYVNCLPHPMASSKKQASSELIIPFDTPPELLFKCKNPPKMLVILNPRSGSGRSSKVFHGIVEPIFKLAGFKLEVVK TTSAGHAKKLASTVDISSCPDGIICVGGDGIINEVLNGLLTRDNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPISAAMAIVKGGLTATDVFAVEWIQTG IIHYGMTVSYYGFVSDVLELSEKYQKRFGPLRYLVAGFLKFLCMPKYSFELEYLPASKEDQEGNGDREVVDMADLYTDIMRRSHTDGLPRASSLSSIDSI MTPSRVSGGDLDTTCSSTHASTEPSEYVRGIDPKTKHLSSGRSNTTIEPPEVIHPQNPLSTTPNWPRTRSKSRTDKGWAGTISIQDNSRCSWGNNATNDR EDISSTLSDPGPIWDAEPKWDSEARWAAVENPIELPGPSDDLESGLRREPVPRFEEKWEFRKGQFLGILVCNHACRTVQSAQLVAPKAEPDDSTLDLVLV HGGGRLRLLRFFSLLQMGKGEHLSLPYVEYIKVKSVKIKSGKQSHIGCGIDGELFPLNGQVISSLLPEQCRLIGRQADHTKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	2.4	0.9215
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	4.7	0.8847
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	8.2	0.8933
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	8.9	0.8732
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10028984 [exp]	9.9	0.8839
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	11.8	0.8804
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	16.0	0.9016
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	17.0	0.8624
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	21.0	0.8690
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	23.2	0.8989

Compare expression of checked genes

Lus10017366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.