Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20020 596 / 0 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 230 / 1e-71 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 229 / 5e-71 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT1G04870 203 / 4e-61 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G12270 194 / 1e-55 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G06930 166 / 9e-46 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 162 / 3e-44 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010162 [exp] 669 / 0 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10040546 [exp] 223 / 3e-68 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10000982 [exp] 222 / 5e-68 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 194 / 1e-56 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10019439 [exp] 190 / 1e-55 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043295 [exp] 189 / 1e-55 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10008664 [exp] 175 / 2e-48 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 173 / 1e-47 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10043412 [exp] 167 / 1e-45 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000300 [exp] 607 / 0 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.014G004000 [exp] 325 / 1e-110 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.006G149400 [exp] 226 / 1e-69 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 220 / 2e-67 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G071200 [exp] 202 / 1e-60 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.001G030200 [exp] 169 / 3e-46 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 161 / 6e-44 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 156 / 5e-42 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10017367 pacid=23140263 polypeptide=Lus10017367 locus=Lus10017367.g ID=Lus10017367.BGIv1.0 annot-version=v1.0 ATGAAGAGCGAAAGCATGTACTCCAACAACTCAGATTACACTAATGGCTACCACGACCAGCTCCAACAACAACAGCAACAACGGGTCGCCACAGCTCACC GGCCGCGAGTCAGACGAGGCTCCCGCAGCGGCGGCGGCGGATTAGGAGTTAGGTCACGTGATTACGGAGATGGGTTTAGGGTTTTTGGTGAGGATCATAA TAGCCACCACCAGCAGCCGCCGCCGCCGTCGCAGTCACAGGCGGAGCAGAATGCCACTCCCTGCACAGACTTTGATATGGCCTACTTCCATTCCTACGCT CATGTCGGTATCCATGAGGAGATGATCAAGGATCGTGTACGGACAGACACTTACCGGAGTGCAATCTTGCAGCACCAGAGTCATATTGAAGGCAAAGTTG TGTTGGATGTTGGTTGTGGCACTGGAATTCTTTCCATATTTTGTGCTCAAGCTGGAGCTAAGCGGGTATATGCTGTGGATGCCAGTGATATTGCCGTGCA GGCTCGTGAAGTTGTGAAGGCAAACAATTTATCGGACAGGATTATTGTATTGCATGGGCGAGTTGAGGATGTTGAAATCGATGAGGAGGTTGATGTTATA GTTTCAGAATGGATGGGGTACATGCTTTTGTATGAGAGCATGCTGGGAAGTGTAATTACTGCTAGAGATAAATGGTTAAAACGTGGAGGTCTAATTCTCC CATCACATGCAACGTTGTACATGGCGCCTATCACACATCCTGATCGATACACAGAAAGCATTGACTTTTGGCGCAATGTTTATGGAATTGACATGTCTGC GATGTTGCCATTAGCTAGACAGTGTGCATTCGAAGAGCCATCAGTGGAGACAATAAGCGGTGAAAATGTTTTGACATGGCCCCATGTGGTCAAGCATGTG GACTGCTATACACTTCAAATTCATGAGCTAGAATCTGTTACGACAAGGTTTAAGTTCGAGTCAATGATGAGAGCTCCATTCCATGGGTTTGCATTCTGGT TCGATGTGGAATTTAATGGACCTGCAAACTCTGCTGTGAACTCAAATGCTCAACTTTTACCACCCGAATCGCCGAATCCCCCCTCATTGGATGGTATAGT GAAGAAGAAGAAGAGGTCAAACCCAAATGACTCGCTTATACTTTCTACTGCTCCAGAGGACCCTCCCACACATTGGCAACAGACGTTGATATACTTCTAT GAGCCAATAGAGGTGGAGCAAGATCAAGTAATAGAAGGCTCATTGACATTGTCACAAAGCAAAGAAAACCGTAGATTCATGAATATTCACCTTGAGTACA GCTCCGGTGGCCGTTCTTTCGTGAAGGAGTCAGTTATGAGATAA
AA sequence Show only first row Show all	>Lus10017367 pacid=23140263 polypeptide=Lus10017367 locus=Lus10017367.g ID=Lus10017367.BGIv1.0 annot-version=v1.0 MKSESMYSNNSDYTNGYHDQLQQQQQQRVATAHRPRVRRGSRSGGGGLGVRSRDYGDGFRVFGEDHNSHHQQPPPPSQSQAEQNATPCTDFDMAYFHSYA HVGIHEEMIKDRVRTDTYRSAILQHQSHIEGKVVLDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAREVVKANNLSDRIIVLHGRVEDVEIDEEVDVI VSEWMGYMLLYESMLGSVITARDKWLKRGGLILPSHATLYMAPITHPDRYTESIDFWRNVYGIDMSAMLPLARQCAFEEPSVETISGENVLTWPHVVKHV DCYTLQIHELESVTTRFKFESMMRAPFHGFAFWFDVEFNGPANSAVNSNAQLLPPESPNPPSLDGIVKKKKRSNPNDSLILSTAPEDPPTHWQQTLIYFY EPIEVEQDQVIEGSLTLSQSKENRRFMNIHLEYSSGGRSFVKESVMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10017367 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10040299 [exp]	6.7	0.8710
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	7.3	0.9247
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	8.7	0.9217
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	12.5	0.9205
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	17.0	0.8940
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	21.9	0.9102
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	23.7	0.9145
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	24.0	0.9090
AT3G29300			unknown protein		Lus10034904 [exp]	24.3	0.9133
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	25.7	0.8966

Compare expression of checked genes

Lus10017367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.