Plant FIBer expression Database

Lus10017369 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24370 56 / 5e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010164
[exp]
160 / 3e-50 AT4G24370 83 / 3e-20 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10017369 pacid=23140133 polypeptide=Lus10017369 locus=Lus10017369.g ID=Lus10017369.BGIv1.0 annot-version=v1.0
ATGAAGAATTACGGCGGCCGCCACAGCAGCAGCACTACCGGCGAGAAAGGAAAGGGTGCGACGGCGAGAAGCAGAAGAAGCGGCGGCAGAGGCGGAACAA
CGGCGGGTGATGACGCGGCAGTGGAAGAGCTGCTCCAATCTGCGCAGGACGAGATGATGCTGAAGCTCTCCTTGGATTCCCACACCACGAAACTCCCCAA
AGATTCCCTTCCTTCCGATCTCCGCCGCCGTTTCGACGCCCTCAAATCACTTCCCGCGCCATCCAACAACAGTTCATCCTCCTCCCACGCCGCCGCCTCC
CGCGGCGTTCCCGAGCCATCGCAGAAGGATCTGATGGCCAGATTCGATGCTCTCCGAGGTAAGAAGGATGGAACTGCAGCTCCTCCGGTTGTGGTCTTCC
CTTCACCGGATCGTAGTAGCGGAATCGTTGACGAAGATGACGAGGAGGAGGATGAGGTTGAGAAGATCATTAGGTGGGCCAAGGATGCTGCCCGTCTTGA
CCCGTCTCCGCCGTCCGACTCCGACGACAGCGACGACGGTGATTTGTCGGAATAG
AA sequence
>Lus10017369 pacid=23140133 polypeptide=Lus10017369 locus=Lus10017369.g ID=Lus10017369.BGIv1.0 annot-version=v1.0
MKNYGGRHSSSTTGEKGKGATARSRRSGGRGGTTAGDDAAVEELLQSAQDEMMLKLSLDSHTTKLPKDSLPSDLRRRFDALKSLPAPSNNSSSSSHAAAS
RGVPEPSQKDLMARFDALRGKKDGTAAPPVVVFPSPDRSSGIVDEDDEEEDEVEKIIRWAKDAARLDPSPPSDSDDSDDGDLSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24370 unknown protein Lus10017369
[exp]
0 1
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Lus10037019
[exp]
6.5 0.8845
AT1G27730 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1... Lus10014631
[exp]
8.2 0.8911
AT2G39770 VTC1, SOZ1, GMP... VITAMIN C DEFECTIVE 1, SENSITI... Lus10024356
[exp]
11.3 0.8830
AT4G30600 signal recognition particle re... Lus10017891
[exp]
17.0 0.9058
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Lus10008963
[exp]
18.8 0.8701
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Lus10008189
[exp]
20.8 0.8947
AT1G12550 HPR3 hydroxypyruvate reductase 3, D... Lus10006708
[exp]
22.2 0.8869
AT5G12840 CCAAT NF-YA1, ATHAP2A... "nuclear factor Y, subunit A1"... Lus10009944
[exp]
28.3 0.8790
AT1G07940 GTP binding Elongation factor ... Lus10040378
[exp]
34.1 0.8418
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Lus10015947
[exp]
38.7 0.8721

Lus10017369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.