Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08580 427 / 7e-149 Calcium-binding EF hand family protein (.1) AT4G27790 187 / 8e-56 Calcium-binding EF hand family protein (.1) AT3G59440 50 / 4e-07 Calcium-binding EF-hand family protein (.1) AT2G43290 45 / 4e-05 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT2G41090 42 / 0.0002 Calcium-binding EF-hand family protein (.1) AT2G41100 41 / 0.0009 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT1G05990 40 / 0.001 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010165 [exp] 550 / 0 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10022381 [exp] 179 / 9e-53 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) Lus10005911 [exp] 78 / 4e-16 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087600 [exp] 469 / 9e-166 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1) Potri.007G076300 [exp] 455 / 4e-160 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1) Potri.015G010300 [exp] 162 / 2e-46 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF10591 [flax] [poplar] SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region
Representative CDS sequence Show only first row Show all	>Lus10017370 pacid=23140242 polypeptide=Lus10017370 locus=Lus10017370.g ID=Lus10017370.BGIv1.0 annot-version=v1.0 ATGCCACATTATTTATTCATCCTATTGAGTATTGCTCATCGTTATCTCATCTCTGGTTTCAAAGATCAAGTTTTACTTTATCAACCCTTCAAATATGAGT TAAATGAACTGGACTCTAGTCGTCAAACACCCAACACTCATCAGATCTGTTTCTTCTTCCCTCTCCTCTCCGGCGACAATGGGGAAAACTCCGGTGATCC TCTACATAACCATATTTATCATACTCCTAGTGCTACTCTCCCACTCCCCCACCAAGCCTCCCTTTCCTCCCAGCAAGAGGCTTCCGCCGCCGCTAATCTC TCCGCCGCTAATCACTCCCCGCCGGCCCCCGGCCACGAGTCCCAGCCGGAGTGGGAAGATTTCGTCGAAGCTGAGGACTACTTGAACGACGAGGAGAAAT TCAATGTCACCAATAGGCTGCTGTTGCTTTTCCCCAAGATTGACGTGGAACCTGCGGATGGCTACGTCGATGAGCATGAGCTTACCGAGTGGAACTTGAA CCAGGCTGAGAAGGAAGTGTTGCACCGTACACAGAGAGAGATGGATGTTCATGATAAGAATCATGATGGATTTATCTCGTTTTCTGAGTATGATCCACCT AGTTGGGCTATTAATTCAGAACCGAGTTCGTTTGGCCAGGACATGGGTTGGTGGAAGGAAGGACATTTCAACGCATCGGATGCAGATGGAGATGGTCTTC TTAATATCACAGAGTTCAATGACTTCTTGCATCCAGCTGACAGTAAAAACCCCAACCTACTACAATGGTTGTGCAAGGAGGAAGTCAGTGAAAGAGATAC AGACAAGGATGGGAAAGTCAGCTTCAACGAATTTTTTCACGGCCTTTTCGACTTGGTAAGGAACTACGATGAGGAAGGGCATAACACCTCTCATTCATCC GACGATGATTCAATGGAGGCTCCTGCTAAGACGCTGTTTGCTCAGCTGGACAAAAATAACGATGGGTTTCTTTCGGACGACGAATTGTTACCCATAGTTG GGAAACTTCATCCTTCTGAACGTTACTACGCCAAGCAACAAGCCGATTATATCATTTCACAGGCAGATGAAGATAAAGATAGTAAACTGACGTTGAGAGA GATGCTAGATAACCCATATGTATTCTACAGTGCGATTTTCACGGACGAGGATGAAGATGATTACGATATACACGACGAGTTCCGGTAA
AA sequence Show only first row Show all	>Lus10017370 pacid=23140242 polypeptide=Lus10017370 locus=Lus10017370.g ID=Lus10017370.BGIv1.0 annot-version=v1.0 MPHYLFILLSIAHRYLISGFKDQVLLYQPFKYELNELDSSRQTPNTHQICFFFPLLSGDNGENSGDPLHNHIYHTPSATLPLPHQASLSSQQEASAAANL SAANHSPPAPGHESQPEWEDFVEAEDYLNDEEKFNVTNRLLLLFPKIDVEPADGYVDEHELTEWNLNQAEKEVLHRTQREMDVHDKNHDGFISFSEYDPP SWAINSEPSSFGQDMGWWKEGHFNASDADGDGLLNITEFNDFLHPADSKNPNLLQWLCKEEVSERDTDKDGKVSFNEFFHGLFDLVRNYDEEGHNTSHSS DDDSMEAPAKTLFAQLDKNNDGFLSDDELLPIVGKLHPSERYYAKQQADYIISQADEDKDSKLTLREMLDNPYVFYSAIFTDEDEDDYDIHDEFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	0	1
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	3.9	0.8888
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	4.0	0.8807
					Lus10010492 [exp]	4.5	0.8764
AT3G49720			unknown protein		Lus10007228 [exp]	4.9	0.8960
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	5.9	0.8870
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	6.7	0.8652
AT3G17120			unknown protein		Lus10037790 [exp]	7.3	0.8778
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	7.4	0.8749
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	10.4	0.8717
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	12.1	0.9042

Compare expression of checked genes

Lus10017370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.