Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18040 563 / 0 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 546 / 0 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 544 / 0 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 265 / 1e-86 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G76540 242 / 1e-77 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G67580 252 / 1e-76 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G20930 237 / 2e-75 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT2G38620 231 / 3e-73 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT5G63370 234 / 3e-72 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT3G54180 227 / 9e-72 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040530 [exp] 810 / 0 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10001184 [exp] 261 / 8e-86 AT1G18040 117 / 6e-31 cyclin-dependent kinase D1;3 (.1) Lus10036106 [exp] 240 / 3e-74 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10038755 [exp] 231 / 5e-74 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10015816 [exp] 244 / 2e-73 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026790 [exp] 236 / 6e-73 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036995 [exp] 242 / 1e-72 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022043 [exp] 244 / 3e-72 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10021611 [exp] 228 / 5e-72 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052100 [exp] 667 / 0 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 655 / 0 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.004G133500 [exp] 265 / 1e-86 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 239 / 2e-76 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 234 / 1e-74 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 234 / 1e-74 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.010G056900 [exp] 246 / 2e-74 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 238 / 2e-73 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.006G113200 [exp] 229 / 1e-72 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.008G178200 [exp] 238 / 2e-71 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017371 pacid=23140147 polypeptide=Lus10017371 locus=Lus10017371.g ID=Lus10017371.BGIv1.0 annot-version=v1.0 ATGGCTGATAACGATCAGGAGAAGAAAGTGGCCGATAGGTATCTAAAGCGTGAAATTCTTGGCGAAGGCACCTATGGTGTCGTCTACAAGGCCATTGATA CCAGGACTGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGGAAGCACAAGGAAGGGGTGAATTTTACGGCTCTTAGAGAGATTAAACTGCTTAAAGA AATTAAAGATCCAAACATCATTGAATTGATTGATGCATTCCCTCACAAGGGGAACTTAAACCTTGTGTTTGAGTTTATGGAGACCGATCTCGAAGCAGTT ATTCGAGACAGAAACATATTTCTCTCACCAGCTGATATCAAATCATACTTTCAAATGACACTGAAAGGTCTAGCCATTTGCCACAAGAAATGGGTTTTGC ATAGGGACATGAAGCCAAACAATTTGTTGATAGGATCAAATGGACAGCTTAAACTGGCAGATTTTGGTTTAGCTCGCGTATTTGGAAGCCCAAATCGCAA GTTCACTCATCAAGTGTTTGCTCGATGGTACAGAGCACCTGAACTGTTATTTGGGGCAAAGCAGTATGGTGCCGGCGTTGATGTGTGGGCGGCAGCCTGC ATATTTGCCGAACTTCTCCTCCGCCGCCCATTTCTGCAGGGATCAAGTGACATTGATCAACTCGGGAAGATTTTTCAAGCATTTGGGACTCCGACACCTT CTCAATGGCATGATTTGGTATACCTTCCTGATTACGTGGAGTACCAAACAGTTCCTCAGCAACCTTTGCGAAAGTTATTTCCAATGGCTAGTGAGGATGC ACTGGATCTGTTATCAAAGATGTTCACTTACGACCCAAACGCTAGGATTTCAGTCCAACAGGCGTTGGAGCACAGGTACTTTTCTTCTGCCCCTTCATCT ACAGAGCCAGTTAAGCTTCCTAGACCAGCTCCAAAGGGACAATCTCTCAATACTAGGGTTTCAGATCTGAATTCCCAGGATGGTCCAACTGTGTTATCAC CTCCAAGGAAAACAAGAAGAGTGATGGCTGAACGCGAAAGCTTTGATGTAAATGCTAACCATCTTGATAAGATTGATGAACATGGGGAAATCAGACAGCC AACTGGCGATACTTCAGGCAGGAATGACCACTTGCCAATGTCGGTAGATCTTTCAGTCTTTGGAACCAGGCCTGTGAGCCGACCGACGATTAACAGGTAG
AA sequence Show only first row Show all	>Lus10017371 pacid=23140147 polypeptide=Lus10017371 locus=Lus10017371.g ID=Lus10017371.BGIv1.0 annot-version=v1.0 MADNDQEKKVADRYLKREILGEGTYGVVYKAIDTRTGQTVAIKKIRLGKHKEGVNFTALREIKLLKEIKDPNIIELIDAFPHKGNLNLVFEFMETDLEAV IRDRNIFLSPADIKSYFQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPNRKFTHQVFARWYRAPELLFGAKQYGAGVDVWAAAC IFAELLLRRPFLQGSSDIDQLGKIFQAFGTPTPSQWHDLVYLPDYVEYQTVPQQPLRKLFPMASEDALDLLSKMFTYDPNARISVQQALEHRYFSSAPSS TEPVKLPRPAPKGQSLNTRVSDLNSQDGPTVLSPPRKTRRVMAERESFDVNANHLDKIDEHGEIRQPTGDTSGRNDHLPMSVDLSVFGTRPVSRPTINR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	0	1
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	1.0	0.8687
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	1.7	0.8222
AT1G50710			unknown protein		Lus10043109 [exp]	8.0	0.8347
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10001820 [exp]	8.0	0.7985
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	8.2	0.8109
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	8.8	0.7945
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10010311 [exp]	10.0	0.8103
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	11.6	0.7976
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	15.7	0.7353
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	16.5	0.7777

Compare expression of checked genes

Lus10017371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.