Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 238 / 1e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 232 / 2e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 229 / 3e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 224 / 4e-74 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G13200 160 / 2e-48 GRAM domain family protein (.1) AT1G28200 153 / 8e-46 FIP1 FH interacting protein 1 (.1) AT2G22475 152 / 4e-45 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G01600 147 / 1e-43 GRAM domain family protein (.1.2) AT4G40100 100 / 5e-26 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010166 [exp] 452 / 5e-164 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 259 / 1e-87 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017373 [exp] 249 / 7e-84 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 248 / 2e-83 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 247 / 5e-83 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10031986 [exp] 158 / 2e-47 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 155 / 3e-46 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10040539 [exp] 149 / 6e-44 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10010279 [exp] 148 / 7e-44 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088400 [exp] 281 / 1e-96 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 276 / 1e-94 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 270 / 7e-92 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075700 [exp] 254 / 7e-86 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075200 [exp] 254 / 1e-85 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 243 / 2e-81 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 226 / 1e-74 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.003G165400 [exp] 163 / 3e-49 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165500 [exp] 160 / 4e-48 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.001G323300 [exp] 159 / 1e-47 AT5G13200 290 / 2e-98 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10017372 pacid=23140224 polypeptide=Lus10017372 locus=Lus10017372.g ID=Lus10017372.BGIv1.0 annot-version=v1.0 ATGAAGAACCCATTTCAGATCACAGGAATCATTCCAGTCAGCTCACTGTCACACATAGTTAAGAAGCCACATTCTGCTACTACAGGATACTTAACTGGTA CAACTTCTGATGCTCAGAACAGATGCAGTGCTTGTACTATTGCCACTGATTCGCAGGCAGTCCGACAAGATCATAGGAGAGACGTTCGAAAGAAAGCAGA CAGTTTCGCCAACCGCATTAAGGAACATGTGAGATTGGGACCAAAGATCACAGAAACTGTGAAAGGCAAGTTGAGGTTAGGGGCTAAAATCCTACAAGGA GGAGGAGTAGAGAGAATTTTCAGGCAGTTATTCACTGTTGATGAAGATGAAAAGTTGTTGAAAGCCTCACAATGCTATCTATCCACAACAGCCGGACCGA TCGCAGGTCTCCTGTTCATCTCGACACACAAACTCGCGTTCTGCAGCGACAGATCGATCAAATTCTCGTCCCCGAATGGAGAATCAATCAGAGTGCACTA TAAGGTGCTGATTCCACTGAGCAAGATCAAGAGAGTGAACCAGAGTGAGAATGCAAAGAGACCTTCCCAGAAGTATGTGGAGGTTGTAACTGTGGACGAC TTTGACTTCTGGTTCATGGGATTCCTGAATTATCAGAAGGCTTTCAAACATATTGAGCTGGCCATTGTATCTCAGAAACACAGATGTGCTCAGATCAAGT GCTAG
AA sequence Show only first row Show all	>Lus10017372 pacid=23140224 polypeptide=Lus10017372 locus=Lus10017372.g ID=Lus10017372.BGIv1.0 annot-version=v1.0 MKNPFQITGIIPVSSLSHIVKKPHSATTGYLTGTTSDAQNRCSACTIATDSQAVRQDHRRDVRKKADSFANRIKEHVRLGPKITETVKGKLRLGAKILQG GGVERIFRQLFTVDEDEKLLKASQCYLSTTAGPIAGLLFISTHKLAFCSDRSIKFSSPNGESIRVHYKVLIPLSKIKRVNQSENAKRPSQKYVEVVTVDD FDFWFMGFLNYQKAFKHIELAIVSQKHRCAQIKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10010166 [exp]	2.0	0.8807
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	3.2	0.9004
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	4.5	0.8793
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	7.7	0.8956
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10013084 [exp]	8.7	0.8390
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	9.5	0.8844
AT2G22795			unknown protein		Lus10007239 [exp]	10.6	0.8277
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	20.2	0.8696
					Lus10028987 [exp]	21.3	0.7521
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	25.4	0.8650

Compare expression of checked genes

Lus10017372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.