Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 235 / 2e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 227 / 4e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 221 / 5e-72 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 214 / 2e-70 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G01600 147 / 1e-43 GRAM domain family protein (.1.2) AT1G28200 142 / 3e-41 FIP1 FH interacting protein 1 (.1) AT5G13200 135 / 8e-39 GRAM domain family protein (.1) AT2G22475 134 / 3e-38 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 89 / 3e-21 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010167 [exp] 427 / 5e-154 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 341 / 5e-120 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 328 / 7e-115 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 248 / 3e-83 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 236 / 1e-78 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10031986 [exp] 135 / 1e-38 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 135 / 2e-38 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10010279 [exp] 132 / 1e-37 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 130 / 9e-37 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075200 [exp] 307 / 1e-106 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075700 [exp] 307 / 2e-106 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 305 / 9e-106 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 273 / 5e-93 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 271 / 1e-92 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 261 / 1e-88 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 207 / 2e-67 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.014G109700 [exp] 143 / 3e-42 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165500 [exp] 140 / 2e-40 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165400 [exp] 140 / 3e-40 AT5G13200 350 / 6e-122 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10017373 pacid=23140155 polypeptide=Lus10017373 locus=Lus10017373.g ID=Lus10017373.BGIv1.0 annot-version=v1.0 ATGAAGGGCTCATATCATCACCAGGAACAAGTTATGGGAGTTCCAATGAAGGGTTCACTTTCTGCAAAGATGGCACCTTTACTACTTGAAGATGCACCAC AACGCTACATCCCTACTCCAGCTCACAAATCCCTGATGCTGAAACAAAGTAAATCATCACAGCCATCGGATTCAGTGCTCAAAAAGATGAACAACAAGCT GGGGAAGAAGGCTGACAAATTCGTGCATGGAATCCGTGAGCATGTGAAACTGGGGAGCAAGATAACGGACACCTTGAAGGGGAAGCTAACTCTCGGAGCC CGAATCCTCCAAGTCGGAGGAGTAAGGAAAGTGTTTCGACAGCTCTTCACTATTTCCGAAGGCGAAAGACTGTTGAAAGCTTCCCAATGCTATCTATCAA CAAGTGCTGGCCCCATTGCCGGCCTGCTCTTCATATCAACCCACAAGCTCGCATTCTGCAGCGAGAGATCGATCCAGTTGTCTTCCCCCGAAGGCAAGAA ATCGATCAGAGTTCATTACAAGGTTCAGATTCCACTCGAAAAGGTAGAGATGGCCAATCAGAGCGAGAACGTGAAGAATCCATTGCAGAAGTATATGGAG ATAATAACTGTGGACGGGTTCGACTTCTGGTTCATGGGTTTCTTGAGTTACAAGAAAGCTTTCAAGTGCCTTGAGCTAGCCATGTCCGGCTGCAGAGCTT CAACTACCAGCTGA
AA sequence Show only first row Show all	>Lus10017373 pacid=23140155 polypeptide=Lus10017373 locus=Lus10017373.g ID=Lus10017373.BGIv1.0 annot-version=v1.0 MKGSYHHQEQVMGVPMKGSLSAKMAPLLLEDAPQRYIPTPAHKSLMLKQSKSSQPSDSVLKKMNNKLGKKADKFVHGIREHVKLGSKITDTLKGKLTLGA RILQVGGVRKVFRQLFTISEGERLLKASQCYLSTSAGPIAGLLFISTHKLAFCSERSIQLSSPEGKKSIRVHYKVQIPLEKVEMANQSENVKNPLQKYME IITVDGFDFWFMGFLSYKKAFKCLELAMSGCRASTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08350			GRAM domain-containing protein...		Lus10017373 [exp]	0	1
					Lus10017966 [exp]	3.6	0.8959
AT2G42760			unknown protein		Lus10005429 [exp]	5.7	0.8955
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	6.5	0.8939
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	9.8	0.8794
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	11.8	0.8768
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	12.0	0.8674
AT5G46940			Plant invertase/pectin methyle...		Lus10015199 [exp]	12.4	0.8354
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	13.6	0.8740
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	13.7	0.8678
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	15.7	0.8518

Compare expression of checked genes

Lus10017373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.