Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43270 524 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 511 / 3e-179 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT5G53370 393 / 3e-132 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G05620 389 / 4e-131 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 388 / 6e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 382 / 4e-128 ATPMEPCRA methylesterase PCR A (.1) AT4G02320 361 / 2e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 362 / 3e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 360 / 4e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 362 / 1e-119 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010170 [exp] 736 / 0 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 416 / 2e-141 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 405 / 2e-137 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 402 / 5e-136 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 400 / 2e-134 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10022412 [exp] 389 / 9e-128 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 375 / 3e-125 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 374 / 3e-125 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10008937 [exp] 371 / 3e-123 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134500 [exp] 599 / 0 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.005G022700 [exp] 424 / 9e-145 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 420 / 2e-142 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013200 [exp] 416 / 1e-141 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 414 / 7e-141 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 412 / 3e-139 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 405 / 1e-137 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.011G135000 [exp] 400 / 1e-135 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.003G072800 [exp] 379 / 9e-127 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.008G011100 [exp] 375 / 2e-125 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10017375 pacid=23140252 polypeptide=Lus10017375 locus=Lus10017375.g ID=Lus10017375.BGIv1.0 annot-version=v1.0 ATGACGAATCCGGACACATGCATCGAAGGCTTCGAAGGAACAAACTCCATCCTCAAATCCCTCGTCGCAGGCGGACTCTCTGACATCACCTCCTCAGTTC AACAGCTTCTAACCGACGTCGACAGCCCAAAGAACAAACCGGCCGGCTCCAATTCAAACTCAGGAGGAGACAAGTTCCCCTCGTGGGTCCAGCGCCAAGA CCGTCGTAAGTTGCTGGCGTTAGCCGTCAACGGCTTAACGGTGGATGCAGTGGTTGCCAAGGACGGAAGCGGCAACTTCACCGACATCATGGACGCCGTC GCCGCCGCCCCTGACTACAGCATGAAGCGGTACGTCGTCTACATCAAGGCCGGCGTTTACCAAGAGTATGTCGAGATTAAGAAGAAGAAATGGAACCTTA TGATGATCGGGGACGGTATGAACCGGACCGTCATCACCGGAAACCGCAACTTCATCGACGGCTGGACCACCTTCCGCACGGCGACTTTCGCTGTGAGCGG GAGAGGATTCATAGCAAGAGACTTAACGATCGAGAACAGCGCCGGACCGGAGAAGCACCAAGCGGTGGCTCTACGGTCCGACTCGGATCTATCCGTTTAC TACCGGATAGAGGTCCGGGGCTACCAGGACACTCTGTACACCCACACCATGAGGCAATTCTACAGGGACAGCGTGATCAAGGGAACGGTCGATTTCATCT TCGGAAATGCGGCGGCGGTGTTTCAGAACTGCTCCCTCCTGGCGAGAAAGGGGCTGGACAACCAGAAGAACACGATCACCGCCCACGGAAAGAAGGACCC GAACCAGTCGACTGGCTACTCGATCCAGTTCTGTAACATCGGGGCGGATTCGGATCTGGCGCCGTACGGGAATTCGAGCTACACGTATTTGGGCCGGCCG TGGAAGAATTTCTCGACGACGGTGGTGATGCAGTCGTACATCGGGGAGGCGGTGAGGCCCGAAGGGTGGCTTGAGTGGAATGGGCCGATGTTTCTGGACA CGCTTTACTATGGTGAGTTTATGAATTATGGGCCTGGGGCGGGTATGGGCCGGAGGGTGACTTGGCCCGGGTATCATGCGTTGAATAGCTCGTCGGCGGC GGCTAATTTCACCGTGGGGCAGTTTATTGAAGGGAATTTGTGGCTGGGGTCGGACGGGGGGAGGTACAATGGCCGGGGTTTATTTTTTTTTGGCGCTGCC GTCGACCGGAAACGATTTGGTGATTCAAAAGAGGCATTTGATAAGGAGATGGGTGGTCATGTTATGGAGGCAGCGACAGTAGATGATCGAGAGGAAGACG TCAGGGAAAGAGAGAGCAATAAGAATGAGGAAAGATAA
AA sequence Show only first row Show all	>Lus10017375 pacid=23140252 polypeptide=Lus10017375 locus=Lus10017375.g ID=Lus10017375.BGIv1.0 annot-version=v1.0 MTNPDTCIEGFEGTNSILKSLVAGGLSDITSSVQQLLTDVDSPKNKPAGSNSNSGGDKFPSWVQRQDRRKLLALAVNGLTVDAVVAKDGSGNFTDIMDAV AAAPDYSMKRYVVYIKAGVYQEYVEIKKKKWNLMMIGDGMNRTVITGNRNFIDGWTTFRTATFAVSGRGFIARDLTIENSAGPEKHQAVALRSDSDLSVY YRIEVRGYQDTLYTHTMRQFYRDSVIKGTVDFIFGNAAAVFQNCSLLARKGLDNQKNTITAHGKKDPNQSTGYSIQFCNIGADSDLAPYGNSSYTYLGRP WKNFSTTVVMQSYIGEAVRPEGWLEWNGPMFLDTLYYGEFMNYGPGAGMGRRVTWPGYHALNSSSAAANFTVGQFIEGNLWLGSDGGRYNGRGLFFFGAA VDRKRFGDSKEAFDKEMGGHVMEAATVDDREEDVRERESNKNEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	0	1
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	1.4	0.9163
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10040685 [exp]	1.7	0.8799
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	2.0	0.8669
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	4.0	0.8807
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	4.5	0.8226
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	6.3	0.8404
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	13.4	0.8343
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	15.6	0.7759
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	16.3	0.8117
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	17.0	0.8277

Compare expression of checked genes

Lus10017375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.