Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19970 516 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G18245 235 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) AT2G15695 43 / 0.0003 Protein of unknown function DUF829, transmembrane 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010171 [exp] 817 / 0 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026001 [exp] 225 / 2e-69 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10028314 [exp] 195 / 5e-59 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 97 / 6e-24 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) Lus10014294 [exp] 0 / 1 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075400 [exp] 533 / 0 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G089000 [exp] 526 / 0 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G023000 [exp] 252 / 1e-79 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05705 [flax] [poplar] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Lus10017376 pacid=23140173 polypeptide=Lus10017376 locus=Lus10017376.g ID=Lus10017376.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGTCCGGAATCCTGCAACGGCCCATAGTGGCAGCAGCTGCCGTCGCCGTGGCATCCGTCTCCACGGATAGATTCCCATCTCTCAGATATT CCAACGGTTCGGATTCCTCGCGGCTTGATGAATCTGTTCAGGATTCTGACTTCTCATGGTCTTCTCACATTGCTGTGTCCAAGCTAGCTGATTTCTCCTT TGTCAATAGAATTCGTGTCCCTTTGCCTAATGTCAACGACTTCCATCGTTCTTCAACCCCATTTTTGGCTGCCAATTGTGGAGCTTCTTCAATTGTTGCT GCATCTCCTCTCCTGGCAGAGTTATACCAGTCAGCTCAGCTGGCTAAAGGGCCTAAGCAGCAGCAAATTGTACCTAAGACTACATTGTCTTCTTCGACTC CAGATGTTCTATACAGATGGCACCTACCGCAACCTAATGCCTCTGGTTCGTCTGATTGCTGTTCGGAGAAGTCCAGGACGGTTGTGGTTCTGCTCGGATG GCTGGGATCGAAGCAGAAGCATCTGAAGAAATATGCTGAGTGGTATACCTCTATGGGCTTTCATGCTATCACGTTCACTTTCCCCATGTCTGAGATCCTT AGCTACCAAGTTGGGGGCAAAGCCGAGCAGGATGTGGAGTTGCTTGTTAACCATCTTGTTGGGTGGTTGGAAGAGGAAGAGATTGGGAAGAACTTGGTTT TCCACACTTTCAGCAATACTGGATGGTTGACGTATGGAGTTATGCTGGAGAAGTTTCAGCAACATGATCCTGCTTTAGTAAAGAGGATTCGGGCCTGCGT TGTGGATTCCGCACCAGTTGCTACCCCTGATCCACAGGTGTGGGCTTCGGGTTTCTGTGCTGCATTTCTAAAAAAGAACAGTGTGGCTACAAAAGGGAAT CTGATTTCAGATGTGGAGAAGGTATTAGTTGGCAGTAGTAGTAAATCATCATTCGACCACCAACCGAAGCCTGCGCTAACCGAAACAGCTTTGCAAATGG TTCTGGAGAAGTTCTTTGGCGTGGTTCTGAATCTTCCTGCAGTAAACAAGAGATTGTCTGATGTGTTGAGCGTATTATCAACACAGCAGCCGAAATGCCC GCAGCTGTACATTTACAGCTCTGCAGATAGAGTGATACCGTCCAGATCGGTGGAATTGTTCATCAAGGAACAGAAGAGGGCTGGACACGAAGTGAGGGCT TGCAATTTTGTGTCAACTCCTCACGTTGACCATTTCAGGAGTGATCCCATATTGTATACTAGTCAGCTCACCAATTTCATCGACGATTGTGTGCTTACTT GCTGCAAGCACTCTTAA
AA sequence Show only first row Show all	>Lus10017376 pacid=23140173 polypeptide=Lus10017376 locus=Lus10017376.g ID=Lus10017376.BGIv1.0 annot-version=v1.0 MASLSGILQRPIVAAAAVAVASVSTDRFPSLRYSNGSDSSRLDESVQDSDFSWSSHIAVSKLADFSFVNRIRVPLPNVNDFHRSSTPFLAANCGASSIVA ASPLLAELYQSAQLAKGPKQQQIVPKTTLSSSTPDVLYRWHLPQPNASGSSDCCSEKSRTVVVLLGWLGSKQKHLKKYAEWYTSMGFHAITFTFPMSEIL SYQVGGKAEQDVELLVNHLVGWLEEEEIGKNLVFHTFSNTGWLTYGVMLEKFQQHDPALVKRIRACVVDSAPVATPDPQVWASGFCAAFLKKNSVATKGN LISDVEKVLVGSSSKSSFDHQPKPALTETALQMVLEKFFGVVLNLPAVNKRLSDVLSVLSTQQPKCPQLYIYSSADRVIPSRSVELFIKEQKRAGHEVRA CNFVSTPHVDHFRSDPILYTSQLTNFIDDCVLTCCKHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10017376 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	7.9	0.9261
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	13.1	0.9336
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	16.9	0.9273
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	18.1	0.9225
					Lus10014739 [exp]	21.2	0.9145
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	22.5	0.8405
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	22.8	0.9147
					Lus10041164 [exp]	28.5	0.9208
AT5G67550			unknown protein		Lus10025583 [exp]	32.2	0.9223
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	36.2	0.9139

Compare expression of checked genes

Lus10017376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.