Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19960 1792 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 1737 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54280 1236 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT4G27370 1131 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08730 651 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G43900 649 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G54560 646 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT2G33240 643 / 0 ATXID, XID myosin XI D (.1) AT1G04600 641 / 0 ATXIA, XIA myosin XI A (.1) AT5G20490 633 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013443 [exp] 1894 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1688 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10038576 [exp] 1142 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10037876 [exp] 1130 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10040996 [exp] 1114 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10032597 [exp] 644 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 637 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 635 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10021570 [exp] 630 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089200 [exp] 1881 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.007G074800 [exp] 1869 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.001G407000 [exp] 1282 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 1248 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.006G220000 [exp] 658 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 642 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G254300 [exp] 636 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.006G145700 [exp] 635 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G233100 [exp] 634 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.019G013800 [exp] 633 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10017377 pacid=23140243 polypeptide=Lus10017377 locus=Lus10017377.g ID=Lus10017377.BGIv1.0 annot-version=v1.0 ATGGGATCACCAGCCTCTGGTGAGTTGGAGAAGTCCGGCAAGACGAACGGAGGAAGTAATTCCGGCTATCCTGAAGGTGACGATAGTATCGATTCTCCGT ATGGTGGGAATACTGCCTCAACTGAAGAGAGGCCTTCTGTGTCTGATGCAAACCAGGATGCTGTGGCTTCTTCTCCTTCGCCTTCGGTTTCCGTGTTTGG AAGTGAACGTAGGTGGGCTGACACCACGTCCTACCATACAAAGAAGAAGCACCAGTCTTGGTTTCAACTTCCAAATGGAGACTGGGAACTGGGAAAGATC ATATCAAGATCGGAGAATGAATCCGTTATTACAACTTCTGATGGGAAGGTGCTAACGGTGAAATCTGAAAGTCTTGTACCAGCAAATCCTGATATACTTG ATGGTGTAGATGATCTGATGCAGCTTAGCTACTTAAATGAGCCATCAGTTCTATACAATCTTCAGTACAGATACAATCAAGACCTGATATATACAAAAGC AGGACCTGTGTTGATAGCTATCAATCCCTTCAAGAAAGTTCCATTATACGGGAATGATTTTATTGAGGCGTATAAGAATAAATTTATTGAGAACCCGCAT GTGTATGCCATTGCAGACACAGCTATCAGAGAAATGATACGAGATGAAGTTAATCAATCTATCATCATAAGTGGTGAGAGTGGAGCTGGAAAAACTGAGA CTGCTAAGATAGCAATGCAGTATTTGGCTGCTCTTGGTGGTGGTAGTGGGATAGAGTACGAGATACTGAAAACGAATCCCATTTTAGAAGCGTTTGGTAA TGCAAAGACTTTGAGGAATGACAATTCAAGTCGCTTTGGAAAGCTGATTGAGATCAACTTTAGTGAAACAGGAAAAATATCGGGTGCTAGAATCCAAACT TTTTTACTTGAAAAGTCTAGAGTGGTCCAATGCATGGAAGGTGAAAGATCATACCATATATTCTATCAACTTTGTGCCGGTGCTCCATCGAGACTTAGAG ATAAGATAAATCTGAAGAGTGCAAATGACTATAACTATCTGAGGCAGAGCAACTGCTGCTCAATTGATGGGGTAGATGATGCTCACAACTTTCACATTGT TACGGAAGCTCTTGACATTGTTCATGTTAGTAGAGAAGATCAAGAGAGCGTCTTTGCAATTCTTGCAGCTGTATTATGGCTGGGAAATGTCTCATTTACC GTAATTGATAATGAGAATCATGTCGAACCTTTGGAAGATGAAAGCCTGGTCATTGTGGCAGAATTAATTGGCTGCAAACTTGAGGACCTTAAGCTGGCAT TGTCAACTCGGAAGATGAGAGTTAGGAATGATACAATCGTACAGAAGCTAACTTTGTCGCAGGCCATGGATGCTAGAGATGCTTTGGCAAAGTCGGTTTA TTCTTCTTTATTCGATTGGCTGGTAGAACAAATAAATAAATCTCTTGCAGTTGGAAAAAGGAGAACTGGCAGATCCATCAGTATTTTAGATATCTATGGA TTTGAATCATTCGATAGGAATAGCTTTGAGCAGTTCTGCATTAATTATGCAAATGAAAGACTACAACAACACTTTAATCGCCATCTCTTCAAGTTAGAAC AAGAGGAATATATCCTCGATGGCATTGACTGGACCAAAGTTGATTTCGAAGATAATCAAGACTGTCTCAACCTTTTCGAAAAGAAACCACTGGGCTTGCT ATCACTATTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTGACTTTTGCCACTAAGCTTAAGCAACATCTGCAATCGAATTCGTGTTTCAGAGCA GACCGAGGCAAATCCTTTGCAGTTTTCCATTACGCTGGGGAGGTTGCATATGATACAACTGGATTTCTGGAGAAGAATAGGGACTTATTGCACATGGACT CGATTCAGCTTCTTTCTTCATCCTCACGCCACCTCCCCCAGATATTTGCGTCAAATATGCTGGCTCAATCCGAAAAACCTGTCATTGGTCCCTTGCATAA AGCTGGTGGAGCCGATTCCCAAAAGCTGAGTGTTGCAACAAAATTCAAGGGTCAACTTTTTCAACTGATGAAACGCTTAGAGAGTACCACGCCACATTTC ATACGCTGCATAAAGCCCAACAACATCCAATCTCCTAGATCATACGAGCAGGGACTCGTATTGCAACAGCTAAGATGTTGCGGGGTCCTCGAGGTTGTCC GAATATCCAGGTCCGGATTTCCTACAAGAATGACGCATCAGAAGTTCGCCAGAAGGTATGGTTTCCTTCTACTCAAAAGTGCAATCTCTCAGGACCCGCT CAGTGTTTCGGTGGCGATTCTTCACCAGTTCGGTATCTTGCCCGAGATGTATCAAGTTGGCTATACAAAGTTATTTTTCCGCACTGGACAGATCGGGATG CTCGAAGATACGAGAAACCGCACTCTTAGTGGCATTTTACGCGTCCAAAGCTGTTTCCGGGGCCATCAAGCTCGTTCCTCCGTGAGAGAGCTTCAGAGTG GGATAGTCATTCTTCAGTCATTTATTCGAGGGGAAAAGATCAGAAAGCAATACTCGATCCAACGGGAAAGACATCGAGCTGCCATTGTTATCCAAAGACA GGCGAAGAGCATGATTTGCAGGAGTAAATATAACAGCATTCATCAGGCGTCGATCTCGATACAATCTGTTATTCGTGGATGGTTGGTTCGAAGATGCTCA GGTGATGTGGGCCTATTAATCTCCAGGATCAAGGGGAACGAGTCGGAGGAAGTGCTGGTGAAGGCCTCGTTTCTCGCTGAGCTACAGCGGCGGGTTCTCA AGGCAGAGGCCGGATTTCGAGAGAAAGAAGAGGAGAACGACATCCTCCATCAACGGATACAGCAATACGAGAGCCGTTGGGCCGAATACGAAGTGAAAAT GAAGTCGATGGAGGAAGTATGGCAGAAACAGATGAGATCTCTGCAATCGAGTCTCTCAATTGCGAAAAAGAGTCTTGCAGTCGACGATTCCGAGAGAAAC TCCGATGCGTCAGTTAATAACACAAGTGACGAAAGGGATTCGACTTGGGATAGTGGAAGTAATAACTATAGAAGCCATGAGGAAGGTAACGGGCACAGGG TTAGACCGATGAATGCCGGTTTGAGCGTTATAAGCAGATTGGCCGAAGAATTCGAGCAGAGAAGTCAAGTGTTCGGAGACGATGCCAAGTTTTTGGTCGA GGTGAGATCTGGACAGGTGGAAGCGAACTTGAACCCGGACAGAGAGCTTAGAAGGTTGAAGGCGATTTTCGAGAGCTGGAAGAAGGATTATAGCGCGAGA TTACGAGAAACAAAGGTGGTATTGAACAAGCTTGCGAGCGAAGAAAGCGCGAGCACTGTCGAGAAAGTGAGGAAGAAATGGTGGGGGAGGTTGAACAGCA CTAGGCATATTTGA
AA sequence Show only first row Show all	>Lus10017377 pacid=23140243 polypeptide=Lus10017377 locus=Lus10017377.g ID=Lus10017377.BGIv1.0 annot-version=v1.0 MGSPASGELEKSGKTNGGSNSGYPEGDDSIDSPYGGNTASTEERPSVSDANQDAVASSPSPSVSVFGSERRWADTTSYHTKKKHQSWFQLPNGDWELGKI ISRSENESVITTSDGKVLTVKSESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQDLIYTKAGPVLIAINPFKKVPLYGNDFIEAYKNKFIENPH VYAIADTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEINFSETGKISGARIQT FLLEKSRVVQCMEGERSYHIFYQLCAGAPSRLRDKINLKSANDYNYLRQSNCCSIDGVDDAHNFHIVTEALDIVHVSREDQESVFAILAAVLWLGNVSFT VIDNENHVEPLEDESLVIVAELIGCKLEDLKLALSTRKMRVRNDTIVQKLTLSQAMDARDALAKSVYSSLFDWLVEQINKSLAVGKRRTGRSISILDIYG FESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYILDGIDWTKVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFATKLKQHLQSNSCFRA DRGKSFAVFHYAGEVAYDTTGFLEKNRDLLHMDSIQLLSSSSRHLPQIFASNMLAQSEKPVIGPLHKAGGADSQKLSVATKFKGQLFQLMKRLESTTPHF IRCIKPNNIQSPRSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMTHQKFARRYGFLLLKSAISQDPLSVSVAILHQFGILPEMYQVGYTKLFFRTGQIGM LEDTRNRTLSGILRVQSCFRGHQARSSVRELQSGIVILQSFIRGEKIRKQYSIQRERHRAAIVIQRQAKSMICRSKYNSIHQASISIQSVIRGWLVRRCS GDVGLLISRIKGNESEEVLVKASFLAELQRRVLKAEAGFREKEEENDILHQRIQQYESRWAEYEVKMKSMEEVWQKQMRSLQSSLSIAKKSLAVDDSERN SDASVNNTSDERDSTWDSGSNNYRSHEEGNGHRVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVRSGQVEANLNPDRELRRLKAIFESWKKDYSAR LRETKVVLNKLASEESASTVEKVRKKWWGRLNSTRHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	0	1
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	2.0	0.8858
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	4.2	0.8852
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	5.0	0.8705
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	5.7	0.8738
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	6.3	0.8616
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	7.9	0.8814
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	8.2	0.8514
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	9.2	0.8586
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	9.8	0.8536
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	10.1	0.8685

Compare expression of checked genes

Lus10017377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.