Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23310 366 / 2e-128 FSD3 Fe superoxide dismutase 3 (.1) AT5G51100 245 / 4e-80 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 218 / 6e-71 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5) AT3G10920 105 / 5e-27 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 98 / 5e-24 Iron/manganese superoxide dismutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010174 [exp] 479 / 2e-172 AT5G23310 359 / 1e-125 Fe superoxide dismutase 3 (.1) Lus10026881 [exp] 218 / 2e-69 AT5G51100 373 / 3e-130 Fe superoxide dismutase 2 (.1) Lus10034222 [exp] 100 / 1e-24 AT3G10920 370 / 2e-131 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10012883 [exp] 100 / 5e-24 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10030534 [exp] 51 / 2e-07 AT3G10920 241 / 8e-81 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089600 [exp] 360 / 1e-125 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.015G110400 [exp] 238 / 3e-77 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1) Potri.012G112301 [exp] 165 / 3e-50 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1) Potri.013G092600 [exp] 107 / 7e-28 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 94 / 1e-22 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10017378 pacid=23140167 polypeptide=Lus10017378 locus=Lus10017378.g ID=Lus10017378.BGIv1.0 annot-version=v1.0 ATGTCTTCGCACCCAGTTGCAACCTTCAGTTTCATGCCACTAATGACTCCTCACGCCGCCTCTTCGGTCTCAAAGCTCCATCATTTATGCTTCCTTCTCT GGTCAGTTCTTTCTACTGTGACAACTCTGATTTCTAATTCAGCCGCTGCAATTCTCGGTTTTGGACTGATGGGGAGGTTTTCGGGTTTCCAGACTATGAA GAAGAAGAAGAAGCCCCAGGTGGATAGATGTCGGAGAGCCTCCAAGGTGGTAGCTTATTTTGGCTTGAAGCCTCCTCCTTATCAACTTGATGCTTTAGAG CCACATATGAGCAAGAGGACTGTGGAGTTGCATTGGGGAGCGCATCATCGTGGTTATTTGGATAACCTGAATAATGCACTAGCTAAGGATGACATTTTGT ATGGATACACCTTGGATGAACTTGTCAAAGTTACTTACAACAGAGGCAATCCTCTACCTGCATTCAACAACGCTGCTCAGGTCTGGAATCATGACTTCTT TTGGGAGTCCATGCAACCAGAAGGCGGCGGAGTGCCTGAACTCGGTGTACTTGATCAAATCGAAAAGGATTTCAGCTCCTTTACGAATTTCAGAGAGAAG TTTGTGGAAGCTGCCTTGGCATCGTTTGGTTCTGGCTGGATCTGGCTTGTTTTGAAGAGAGAAGACTCAGAATCGGCACGTCTTGAAATAGTGAAGACAT CAAATGCTATCAATCCACTTGTGTGGGATGACATTCCTATTATCAATTTGGATATGTGGGAGCATGCTTACTATCTGGATCACAAGAATGAGAGAGCAAC CTATGTGAATGCATTCATGGATCATCTGGTATCTTGGGATACAGCAATGGGAAGGATGGCCAGGGCAGAGGCATTCATAAATTTGGGGGAACCTACTATC CCGATCGCATAA
AA sequence Show only first row Show all	>Lus10017378 pacid=23140167 polypeptide=Lus10017378 locus=Lus10017378.g ID=Lus10017378.BGIv1.0 annot-version=v1.0 MSSHPVATFSFMPLMTPHAASSVSKLHHLCFLLWSVLSTVTTLISNSAAAILGFGLMGRFSGFQTMKKKKKPQVDRCRRASKVVAYFGLKPPPYQLDALE PHMSKRTVELHWGAHHRGYLDNLNNALAKDDILYGYTLDELVKVTYNRGNPLPAFNNAAQVWNHDFFWESMQPEGGGVPELGVLDQIEKDFSSFTNFREK FVEAALASFGSGWIWLVLKREDSESARLEIVKTSNAINPLVWDDIPIINLDMWEHAYYLDHKNERATYVNAFMDHLVSWDTAMGRMARAEAFINLGEPTI PIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	1.4	0.9507
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	3.7	0.9459
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	5.5	0.9220
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	6.0	0.9332
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	6.2	0.9095
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	7.7	0.9317
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	8.8	0.9110
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	10.0	0.9281
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10020035 [exp]	11.1	0.8935
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038270 [exp]	12.7	0.8655

Compare expression of checked genes

Lus10017378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.