Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 201 / 1e-54 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010175 [exp] 792 / 0 AT1G05460 226 / 4e-63 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010577 [exp] 119 / 5e-28 AT1G05460 610 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074070 [exp] 464 / 1e-155 AT1G05460 211 / 2e-57 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G089800 [exp] 459 / 2e-152 AT1G05460 214 / 3e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 210 / 7e-58 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 194 / 2e-52 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017379 pacid=23140141 polypeptide=Lus10017379 locus=Lus10017379.g ID=Lus10017379.BGIv1.0 annot-version=v1.0 ATGAATGGGTTCATCAAGCTCATAGGGGCAATCGTTATTTCGGGCTGCGTAGGGTGGTGTTTTTTCCGCCGGAGAGGTGATGACTCCCCTCCTGCTCGCC GGCGAAGGAGGTCCCCAAGCCCACCTCCTTACAGTAGAAATGTATATGAAACAAAACATTTCAACCAACCTTCTGCATCATATTTGTCTAATGATGCTCG ATTACCATCCACTTCTAAGCCATCTCGATCCTCCCCACTTGTACCTGAAACATCTTCTTTTTCTTCTTCTAAGCAATTTTCATCTGCTGCTAAACAACCT TCTGTTCCAAGTCCAAAACCCTCACCATATAAGCCTTCTGACTATCGACCATCTGCGCTAAAGACGGGCTGGGAAACCCCCACACTTGATCCATTACCAT CCACCTCTAAGCCATCTCGATCCTCCCTAGTGACACCTGAAACACCATCTTCATTTTCTAAGAAGTTTCCACCTGCTGCTGCTATACCTGCCCCAGATAC CTCTGAGGTCACTGTGAAGCCGACACTACGTCTGGTGTCCTCAAGTTCGACTGATAGGAAAACAAAATCTGAATACATTTGGGTTGAGAAAGGCAAGTCG CCTGTTTATGAGGTTCCAGAGAACGTTGAATCTCTGATCGACCAAGATAAGGTGCCTGATGTGCTGAGGAAGCCTTTATCTGCTTCATCATACAATAAGT TCTTTGCTGCTCTTTTGTATGCAGAGGACAGCTACCTCAAGAAATGGAGCGAGTTCCAGCTATTCAACGTGGCTTTAGAGTTGAAAGAGACAACAATTTA TAAGAAAGATAAGAGCAGCAGTAAGAAGGTGGTGAAGAAGACCTTTGTGTCATTTGAGATCGATGCAGTTCCGGAGAGGCGACCGTTCCTTCTGTCTAGG GACTACGTCATCGCACGACTCTCAGATGGAAACAGCAGCCCTGCATTTCAGGGGCTAATCTACCGCGTGCAGCGCAGTACATCCGTGCTAGTCGAATTCG GCGAAGACTTTGCATCTCAACATCGTCCATATTTCACGTACGACGTGAGCTTCTCATTCAACAGAGTCTGTCTGAAAAGGTTTCACCAGGCGATTGAACT CGCTTCAAACCGTGCATACTTAAGAGCCTTCATTTTCCCGGATTCTGAATCAGGAAAGATCACGACAACAAGCAAGACAACCTCACCACCACCACCACCG ATATACATTCTCAATCATATACTCGATAAGCATCAAAGGATGGCAGTCCGCCGCATTCTAAACCTCCGGGGAGCTCCACCTTATCTAGTGGAAGGTCCAC TCTCAGTGGTGGAGAGGGATCACAAGCAGAAACTATCAAGAACTGGATTGGTAGTCAAAGAGGCAGTGCTGCAGCTCTACCAAAACTCACGGAGTAATCG AATTCTGATATGCACACCACTGAACAAAACCTGCGATGCCCTGATAGAGAGTTTGAAAGAAGAGATCAAGGATCATGAAATGTTCAGAGTGAATGCAGCA TTCAGGGAATTGGGGGAGGTGCCTACTGAGATCCTCAACTGGAGTGCTGCATATGAAGAGGAATGCTTCACGTGCCATCCTCTTCATGAACTCAGAAAAT TCAGAGTCATAGTGTCAACATTTGTGTCTAGCTTTCGGCTACAGAGCGAGGGGATGTGCCCTGGGGATTTTAGTCATGTTTTTTTGGTGGATGCTTCGAT GGTTATGGAGCCGGAAGTGATGGTGGCGGTCGGTAACCTGGCGGATGAGAAGACTGCTGTGATAGTTACAGGTGCAGCAGCAAGGGCGAGCTACACTCGT TCGGTTCGGTCCGATATTGGTAGGAAGTTTGGACTTTTGATATCGTACTTCGAAAGACTTCGAAACAGCAGCGGGTTGTTGTACCGTTACTCTGATGATT CGGCGTTTATCAGCCAACTTGGGGAAGAGGAGTGCAAGAACAACTACGGTTCTTAA
AA sequence Show only first row Show all	>Lus10017379 pacid=23140141 polypeptide=Lus10017379 locus=Lus10017379.g ID=Lus10017379.BGIv1.0 annot-version=v1.0 MNGFIKLIGAIVISGCVGWCFFRRRGDDSPPARRRRRSPSPPPYSRNVYETKHFNQPSASYLSNDARLPSTSKPSRSSPLVPETSSFSSSKQFSSAAKQP SVPSPKPSPYKPSDYRPSALKTGWETPTLDPLPSTSKPSRSSLVTPETPSSFSKKFPPAAAIPAPDTSEVTVKPTLRLVSSSSTDRKTKSEYIWVEKGKS PVYEVPENVESLIDQDKVPDVLRKPLSASSYNKFFAALLYAEDSYLKKWSEFQLFNVALELKETTIYKKDKSSSKKVVKKTFVSFEIDAVPERRPFLLSR DYVIARLSDGNSSPAFQGLIYRVQRSTSVLVEFGEDFASQHRPYFTYDVSFSFNRVCLKRFHQAIELASNRAYLRAFIFPDSESGKITTTSKTTSPPPPP IYILNHILDKHQRMAVRRILNLRGAPPYLVEGPLSVVERDHKQKLSRTGLVVKEAVLQLYQNSRSNRILICTPLNKTCDALIESLKEEIKDHEMFRVNAA FRELGEVPTEILNWSAAYEEECFTCHPLHELRKFRVIVSTFVSSFRLQSEGMCPGDFSHVFLVDASMVMEPEVMVAVGNLADEKTAVIVTGAAARASYTR SVRSDIGRKFGLLISYFERLRNSSGLLYRYSDDSAFISQLGEEECKNNYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	0	1
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	3.9	0.8196
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	6.0	0.7900
AT4G30010			unknown protein		Lus10001623 [exp]	6.9	0.7518
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	9.8	0.7493
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	16.2	0.7716
AT5G10010			unknown protein		Lus10006823 [exp]	20.0	0.7726
AT5G61390			Polynucleotidyl transferase, r...		Lus10019078 [exp]	20.8	0.7626
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	23.1	0.7815
AT5G60370			unknown protein		Lus10023342 [exp]	23.4	0.8176
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	26.2	0.8046

Compare expression of checked genes

Lus10017379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.