Plant FIBer expression Database

Lus10017380 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011624
[exp]
110 / 1e-31 AT5G52450 49 / 2e-07 MATE efflux family protein (.1)
Lus10030721
[exp]
109 / 1e-30 AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1)
Lus10009214
[exp]
82 / 6e-21 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1)
Lus10009688
[exp]
82 / 7e-19 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10036045
[exp]
71 / 7e-15 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10017380 pacid=23140184 polypeptide=Lus10017380 locus=Lus10017380.g ID=Lus10017380.BGIv1.0 annot-version=v1.0
ATGGCTACTTCTTTCGCTACTGTCACTGGCTTCAGCTTACTGCATATACCTCTATGGTTTACGAGTCAGCAGAGAGCTTTCCAAGGTGAGAAACATGTGG
AGCTGGAGGTTGGGGACAAGGCTTGGACAGTGAATCTCCAATGCAGAAGACTAACTTTCGTTTTCACGTACCACGAGGTGGGCTTCAGGACCTCCTTTGC
CGGCGAGGAGGGGGTCATCATCATCTATCCGGCGAAAGCTGAACTTGAACAAGACTTTGGAAATGATGATGATGCGGTGAAGGAGAAAGAAGGAGAGCTA
ATACTGGCAGCAGCTGCTACGAAGACGAGGTTTGGGTTCTGTGGGCGAACGATTTGGGACAAGAAAAGCACTAGCGAAGCCATGCCCAATAAAGGAAGAG
GCTTTGAATATCAAGAGCTTGGAACAGAGCAACAAGAGAGATGGGAAATTAAGTGCGGGAGCTGA
AA sequence
>Lus10017380 pacid=23140184 polypeptide=Lus10017380 locus=Lus10017380.g ID=Lus10017380.BGIv1.0 annot-version=v1.0
MATSFATVTGFSLLHIPLWFTSQQRAFQGEKHVELEVGDKAWTVNLQCRRLTFVFTYHEVGFRTSFAGEEGVIIIYPAKAELEQDFGNDDDAVKEKEGEL
ILAAAATKTRFGFCGRTIWDKKSTSEAMPNKGRGFEYQELGTEQQERWEIKCGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017380
[exp]
0 1
Lus10001746
[exp]
8.2 0.7062
AT4G37470 alpha/beta-Hydrolases superfam... Lus10037651
[exp]
9.8 0.7471
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10043161
[exp]
10.5 0.7566
AT3G27810 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMA... Lus10013081
[exp]
12.2 0.7441
AT2G34730 myosin heavy chain-related (.1... Lus10038540
[exp]
20.5 0.7294
Lus10000650
[exp]
23.9 0.7482
AT5G12000 Protein kinase protein with ad... Lus10006021
[exp]
25.7 0.7343
AT5G25090 AtENODL13 early nodulin-like protein 13 ... Lus10003432
[exp]
29.0 0.7151
AT1G67950 RNA-binding (RRM/RBD/RNP motif... Lus10034580
[exp]
29.3 0.7419
AT3G27210 unknown protein Lus10034680
[exp]
32.1 0.5924

Lus10017380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.