Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19920 303 / 9e-99 unknown protein AT5G64230 150 / 9e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010181 [exp] 596 / 0 AT3G19920 311 / 5e-104 unknown protein Lus10010180 [exp] 193 / 6e-60 AT3G19920 46 / 2e-06 unknown protein Lus10010617 [exp] 156 / 8e-43 AT5G64230 294 / 3e-97 unknown protein Lus10033177 [exp] 154 / 3e-41 AT5G64230 296 / 2e-96 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073600 [exp] 172 / 1e-49 AT3G19920 119 / 9e-31 unknown protein Potri.017G053200 [exp] 157 / 4e-43 AT5G64230 244 / 1e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017384 pacid=23140218 polypeptide=Lus10017384 locus=Lus10017384.g ID=Lus10017384.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTGAGGGCAGGGATGGGACCGTTGGAAATGATGGAGTACTACAAGAAGAACATCTACTACAACAAGAAGGCGGCGCCGGCGCCGGCGTCGA GCATGCTGAACGCGCTCTTCATGTCGACGGTCAACGCCGCCTCCAGAACCTTGGTCTCCGTGGCGTCCAACATACAGCCCGACAACGCCGACAGGTGGAG GCCCACCGACCACCTCCGGTTCATGGTCATGCTCATGTCGTGGCTCACCGTCTGGGCCGTGAGGGTATTGATGGACTTCTTACCCGTCCCGTCAATCACG TGGTCCCCGGTGAGCCACCTCCTCTCCGCCGCCATTTCGCCCTTCAAGCTGGCCCTGCCGGCAGCTCCGGCAGTATTGGCGGCGCCGTTTTCTTCGACAG TGGCGGCTGGGAAGCTGATTGGAGATAGTTATAATTATAATTACTCGACGTCGGTTGTGCCGGCGGTGGGGGCTTCGTCGATGGATGTGATTTTGCAGGA TGGGTACTTGGATGAGACTTCTCTTCACGCTATTGGAAGGTCTCTCACCGACATCCTAGCTTTACTAAATGAGATACCAGCGACATCAAGGAAGTACCAA TTCGCGATGACGATGGCCGACAGGATAATGGACGGGAACTTCCGCCACGGCCATCCCGAGCTCGTCGAAATCAACCGCATCGCGCTCTCCTCCTCCTTTG CCCGCACCCTGACATTACTCTACCGGTCCATCCAGGAGCCGACATTCAACCCGGACTCGACCGCTTCTTGGGCGGCCCGGGTCGTCGGGGCATTCCCCAT GGGCTCCCTAGTCGTCTCCACCGCCAGGGGGCTCAACTACTGCCTCACCACCTTCCTCCAGACCATAGGCAGCGGTGGTGGTGGGGCAGCGTGGACTGAC AACCGACTTGCCCTGCCCGGTGGGGTCACCCCTGGTGGTAGTGGCACTAGTAATATTGCTCATGGTAGGGAGGATGTGATGTCGGAGAAGCTGGCGGAGG AGCTGCTCTGGATTACTAACAAGCTTAGGACGTACGGGTTTGTGGAGGAGGCGTTGGTGCAGTGGAGTCACGCTTCGGGGCTCGCGTCTGTTGCTCTGTC CGGGAGCATTAGCCCCCGGGTCCAAGGCCTCATTCTCAAGACCTCAGCTGTATTGATCGGAGATCTAGGCGGAGGCCGGGAGGCGACACTACAAGTGTCG GGGCAAGTGAAGTCGAGGCTCCTGATGGTGTGGCTGCCGGTGCTGTGCCACGCCAACAACGGGCTGGCGTACCCAGTGCTGTCGACGTACGAGATGCTGG AGGTGGAGAGAGCGATCGACGAGGTGATGACCACTCTCCCCGGGATGGACCAGGAAGTCATCCTGACGAACTGGATCCACGACTACGCGGTCACGTCCTC CGAGTGGCCGAACCTCCAATCCTCTTACGACCGTTGGTGTCAGTCCACTCGTCAACTTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10017384 pacid=23140218 polypeptide=Lus10017384 locus=Lus10017384.g ID=Lus10017384.BGIv1.0 annot-version=v1.0 MAAVRAGMGPLEMMEYYKKNIYYNKKAAPAPASSMLNALFMSTVNAASRTLVSVASNIQPDNADRWRPTDHLRFMVMLMSWLTVWAVRVLMDFLPVPSIT WSPVSHLLSAAISPFKLALPAAPAVLAAPFSSTVAAGKLIGDSYNYNYSTSVVPAVGASSMDVILQDGYLDETSLHAIGRSLTDILALLNEIPATSRKYQ FAMTMADRIMDGNFRHGHPELVEINRIALSSSFARTLTLLYRSIQEPTFNPDSTASWAARVVGAFPMGSLVVSTARGLNYCLTTFLQTIGSGGGGAAWTD NRLALPGGVTPGGSGTSNIAHGREDVMSEKLAEELLWITNKLRTYGFVEEALVQWSHASGLASVALSGSISPRVQGLILKTSAVLIGDLGGGREATLQVS GQVKSRLLMVWLPVLCHANNGLAYPVLSTYEMLEVERAIDEVMTTLPGMDQEVILTNWIHDYAVTSSEWPNLQSSYDRWCQSTRQLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19920			unknown protein		Lus10017384 [exp]	0	1
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	1.0	0.8500
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	4.0	0.8334
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	16.3	0.8251
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	17.4	0.8318
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	21.9	0.7600
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	23.7	0.7961
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	24.0	0.7969
					Lus10029831 [exp]	25.8	0.7781
AT5G39110			RmlC-like cupins superfamily p...		Lus10035293 [exp]	26.9	0.7722
					Lus10036864 [exp]	28.5	0.7661

Compare expression of checked genes

Lus10017384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.