Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19910 233 / 3e-74 RING/U-box superfamily protein (.1) AT3G63530 119 / 2e-31 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G47180 100 / 2e-24 RING/U-box superfamily protein (.1) AT3G15070 94 / 7e-21 RING/U-box superfamily protein (.1.2) AT1G53190 89 / 3e-19 RING/U-box superfamily protein (.1.2) AT5G52140 85 / 1e-18 RING/U-box superfamily protein (.1) AT5G42940 84 / 2e-17 RING/U-box superfamily protein (.1) AT2G15530 79 / 1e-15 RING/U-box superfamily protein (.1.2.3.4) AT1G45180 79 / 1e-15 RING/U-box superfamily protein (.1) AT5G67120 76 / 2e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010182 [exp] 493 / 9e-176 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10016416 [exp] 122 / 2e-32 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 122 / 2e-32 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 108 / 1e-27 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 96 / 7e-23 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 86 / 1e-19 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10018140 [exp] 82 / 8e-18 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1) Lus10029693 [exp] 82 / 1e-17 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10025691 [exp] 78 / 2e-16 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090800 [exp] 259 / 2e-84 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 258 / 6e-84 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 111 / 8e-29 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 110 / 1e-28 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.009G062100 [exp] 110 / 3e-28 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 110 / 6e-28 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 109 / 8e-28 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 103 / 2e-25 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 100 / 6e-23 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 92 / 2e-20 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017385 pacid=23140248 polypeptide=Lus10017385 locus=Lus10017385.g ID=Lus10017385.BGIv1.0 annot-version=v1.0 ATGGAGAAGAATTGCAGCAGCACCAATTCCATCGCCAAGCCAGGTGCAGAGGCAGAACCGAAGCCCAATGACAACACCGCCACCGCCACCGTCATCAGAG AACATGAGCTGCCCCTTACCAAGGAACCGCCTAATGTCTCAGTTGCCTTAACGAATGGAGAAGCAGCTCCTTTAACGAATGGAGTACAAGATGTTGATGA TGATGATGAAGACGAAGAAGGAGGAAGCGACATGGTGGATGACGACGAAGAGGAAGAAGAGGAGCAGGGGGATGCTCCTGCTCGCAACTCTCCAGCGAGA ACTCCTTTCACTAATCTGAGCCAGATGGATGCTGACCTTGCTCTTGCCCGCACCCTCCAAGAACAGGAAAGGGCATACATGATGTTAAGTCGCGTATCAA TGAGCATGAATGAGGAGACTGATTGGGTAGGGGCAAGCTATGGTGAAGACGATGATGATTTCGACGACCCTGATGATGTCACAGATGAAGATGAGTTTGA TGAGGAGGGATATGGTGAAAGTGAGGGTGAGGATGGTGTGGATGCATTCGATGTGCATGCTCATGCTAATGATGAAGATGATAACCATAATGATGACGCT CCTGACCTTGGAGATGACGCTGCCGCTTTTTCGAGTGATGAGGCTTATGCTAGAGCTTTACAGGATGCTGAAGAAAGAGAAATGGCTGCTAGACTATTTG CCCTTGCCGGGATAAATGAAAGGGGAGTTGAATTTGTTGAACATCATGGTGGTCATTCTCAGGATACATGGGAGGAAGTTGATCCAGACGAACTTTCTTA TGAGGAGCTGCTTGCTCTGGGAGAAGTAGTTGGGACAGAAAGCAGAGGGCTCTCTGAAGATACAATTGCCAACCTCCCTAGTGTGAACTACAAAACTGGA AGCAATCAGAGTGGAACTAGCGATTCCTGCGTAATATGCCGGTTGGATTTTGAGGATGAAGAGGCCGTCACGGTGCTCTCATGCAAACATTCGTACCATG CAGAGTGCATCAACAATTGGTTGAAAATAAACAAGGTGTGCCCGGTATGCAGTGCAGAGGTTTCGACATCTGGAGGAAGCCAGGCGTCGTCCTAG
AA sequence Show only first row Show all	>Lus10017385 pacid=23140248 polypeptide=Lus10017385 locus=Lus10017385.g ID=Lus10017385.BGIv1.0 annot-version=v1.0 MEKNCSSTNSIAKPGAEAEPKPNDNTATATVIREHELPLTKEPPNVSVALTNGEAAPLTNGVQDVDDDDEDEEGGSDMVDDDEEEEEEQGDAPARNSPAR TPFTNLSQMDADLALARTLQEQERAYMMLSRVSMSMNEETDWVGASYGEDDDDFDDPDDVTDEDEFDEEGYGESEGEDGVDAFDVHAHANDEDDNHNDDA PDLGDDAAAFSSDEAYARALQDAEEREMAARLFALAGINERGVEFVEHHGGHSQDTWEEVDPDELSYEELLALGEVVGTESRGLSEDTIANLPSVNYKTG SNQSGTSDSCVICRLDFEDEEAVTVLSCKHSYHAECINNWLKINKVCPVCSAEVSTSGGSQASS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	0	1
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	2.8	0.9074
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	4.7	0.8637
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	8.3	0.9014
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	11.8	0.8871
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	12.8	0.8737
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	13.5	0.9042
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	15.6	0.8978
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	17.2	0.8766
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	19.1	0.8509
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	27.9	0.8787

Compare expression of checked genes

Lus10017385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.