Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08305 357 / 8e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 246 / 8e-77 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G06540 238 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 234 / 1e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 224 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26630 219 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 217 / 4e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 212 / 8e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G44230 214 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 214 / 5e-63 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010183 [exp] 707 / 0 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 260 / 2e-81 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 238 / 9e-73 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 238 / 9e-73 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 233 / 1e-71 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027389 [exp] 219 / 8e-67 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 220 / 6e-66 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 219 / 2e-65 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015718 [exp] 216 / 3e-65 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073100 [exp] 446 / 1e-154 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 248 / 2e-77 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 249 / 5e-77 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 235 / 8e-73 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220600 [exp] 233 / 4e-72 AT3G26630 481 / 2e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G316500 [exp] 236 / 2e-71 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G108500 [exp] 230 / 8e-71 AT4G18840 382 / 3e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G110800 [exp] 228 / 4e-70 AT5G61800 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G087000 [exp] 226 / 5e-70 AT5G66520 335 / 9e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 227 / 1e-69 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017386 pacid=23140192 polypeptide=Lus10017386 locus=Lus10017386.g ID=Lus10017386.BGIv1.0 annot-version=v1.0 ATGTCTTCCCTGTCATGGAGAAATGGCGCCCAAATCCAGTCTCTCATATCCATACTCCACAGCTGCAATACATCCCTACAGCTCAAGCAGATCCACGCTC TAACCATCACTCTCCGCATCTCCCAGCTCGATTCCTTCATCTCCAAAATCCTATCTTCCCCTGAATCCACCAATCTGTACTACCTCGATTACTCTTACCG GGTTTTAACAAACCTCCCCTTTCCGGCGCCGACCTACGGTTGGAATGCAGTCATAAGGAGCTACTCCAGCACCAAATTCCCCAACAGAGCACTGTCATCT TTCGTCCAAATGCTGCGGGCCGGAATCACCCCTGACCATCTCACGTATCCTTTTCTTTTCAAAGCATGCTCGCGTCTTTTCTCGCTGAAGCTCGGCTTCT CAGTCCACGCACACACAACGAAGATCGGGTACGGTTCCGATCGTTTTATAGCCAATTCCATGATTCATATGTACGCATCCTGTAAGGATATAGATCATGC ACGCATGGTGTTCGACGAAATTCCTGTTAAGAATCTCGTCTCGTGGAACTCGATGGTGGACGGTTACGCAAAGTGTGGAAACATAAGCCTTGCACGTCAG GTGTTTGATTTAATGCCCCAGAGGGACGTAGTCTCTTGGAGCTCCTTGATTGATGGATATGTCAAGGCAAAGGAATACAAAGAAGCCATGGTAATGTTTG AAAAGATGAAAGGGGATGATTCAGATTCAGGCGCTAGAGCCAACGAGGTGACGATGGTGAGCGTGTTGAGTGCTTGTGCTCACTTGGGTGAACTTGAGCA AGGCAGGTTGATGCATCAGTACATCTCAAACAACTCTTTGCCGATGACTTTAGTTCTGAGAACTTCTCTTGTTGACATGTACGCCAAATGTGGAGCTGTG GAGGAAGCTTTTACGGTGTTTCGTGGCGTTCTTGTAGAGAAAGCTGACGTCTTGATATGGAATGCCATGATTGGTGCCCTTGCAACGCATGGATTGGTCG AAGAATCGCTTGGTTTGTTTAGGGAGATGATGCAAACTGGCCGGATCAAGCCGGATGAGATAACTTACTTATGCCAACTTACTTATGCCTGTTGA
AA sequence Show only first row Show all	>Lus10017386 pacid=23140192 polypeptide=Lus10017386 locus=Lus10017386.g ID=Lus10017386.BGIv1.0 annot-version=v1.0 MSSLSWRNGAQIQSLISILHSCNTSLQLKQIHALTITLRISQLDSFISKILSSPESTNLYYLDYSYRVLTNLPFPAPTYGWNAVIRSYSSTKFPNRALSS FVQMLRAGITPDHLTYPFLFKACSRLFSLKLGFSVHAHTTKIGYGSDRFIANSMIHMYASCKDIDHARMVFDEIPVKNLVSWNSMVDGYAKCGNISLARQ VFDLMPQRDVVSWSSLIDGYVKAKEYKEAMVMFEKMKGDDSDSGARANEVTMVSVLSACAHLGELEQGRLMHQYISNNSLPMTLVLRTSLVDMYAKCGAV EEAFTVFRGVLVEKADVLIWNAMIGALATHGLVEESLGLFREMMQTGRIKPDEITYLCQLTYAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	0	1
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	2.2	0.8088
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	3.2	0.8357
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	3.5	0.8402
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	9.6	0.8265
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003546 [exp]	14.1	0.8035
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	14.4	0.7759
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	17.1	0.7696
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	18.0	0.7835
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	21.0	0.7960
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	30.7	0.7927

Compare expression of checked genes

Lus10017386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.