Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23260 173 / 9e-54 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G57230 123 / 2e-34 MADS AGL16 AGAMOUS-like 16 (.1.2) AT5G20240 119 / 3e-33 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT4G09960 112 / 1e-30 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G37940 112 / 4e-30 MADS AGL21 AGAMOUS-like 21 (.1) AT3G58780 112 / 7e-30 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G22950 110 / 8e-30 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 110 / 1e-29 MADS AGL14 AGAMOUS-like 14 (.1) AT5G62165 110 / 1e-29 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G03710 109 / 1e-29 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010184 [exp] 377 / 7e-134 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10042749 [exp] 123 / 2e-34 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10029719 [exp] 117 / 4e-32 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10031665 [exp] 113 / 1e-31 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10004638 [exp] 112 / 4e-30 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034370 [exp] 111 / 1e-29 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 110 / 1e-29 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005302 [exp] 111 / 2e-29 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034662 [exp] 109 / 8e-29 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073000 [exp] 232 / 6e-77 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.015G125501 [exp] 152 / 3e-45 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G125600 [exp] 143 / 6e-42 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.009G079000 [exp] 122 / 5e-34 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.002G079000 [exp] 116 / 5e-32 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G109601 [exp] 115 / 1e-31 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.012G132600 [exp] 114 / 4e-31 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 114 / 8e-31 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.005G182200 [exp] 112 / 3e-30 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.013G104900 [exp] 112 / 4e-30 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10017388 pacid=23140160 polypeptide=Lus10017388 locus=Lus10017388.g ID=Lus10017388.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGGAAGATTACTATAAAGAGGATAGAGAACCAGACGACGAGGCAGGTGACCTTCTCGAAGCGGAGGAATGGTTTGCTGAAGAAGACACATG AGCTTTCGGTTCTCTGTGATGCTCAGATTGGTCTCATCATCTTCTCAGCCACCGGCAAGCTCTGCCAGTACGCCTCCGAGCCCTCCAGGATGGAGCAGAT CATAGAGAGGTACCAGAAGGCTACCGGAACTCGGATTCCTGAACACGATTCTCGGGAGCAAGTGTTGAATGAGATTGCTGTGTTGAGGAAAGAGACAAAG CAGCTTCAGGTGAGCATGAGGCGCTACACCGGAGAGGAAATGGCCAACATACCCTTCCAGGACTTGGAGCAGCTCGAGCAGCAGCTCGAACGCTCCGTCA CCAAAGTCCGCGATCGCAAGAATGAACTTCTGCAGCAGCAGCTGGAAAACCTTCGCAGGAAGATACAGGAGAATCGGTCTGCTTTCGAGTTCCAGCAGCA GCCACAGGTCGAACCGGATGATGCCAAGCCACTCGAACAGCAGCAGTTTATACAACTGCAGGATCAGTTCCCTTTCTGCGGAGAGCCCAGCAGTAGTAAT ACTGTGCTGCAACTATCAACTCTCCCTCCCCACCTCAACTCTTACCATCTGCACCTCGGTCAGTCGAGCTTCCAATGGTACGTATTCGAAAGAATCATTG CAGCTTGGCTAATTTAA
AA sequence Show only first row Show all	>Lus10017388 pacid=23140160 polypeptide=Lus10017388 locus=Lus10017388.g ID=Lus10017388.BGIv1.0 annot-version=v1.0 MGRGKITIKRIENQTTRQVTFSKRRNGLLKKTHELSVLCDAQIGLIIFSATGKLCQYASEPSRMEQIIERYQKATGTRIPEHDSREQVLNEIAVLRKETK QLQVSMRRYTGEEMANIPFQDLEQLEQQLERSVTKVRDRKNELLQQQLENLRRKIQENRSAFEFQQQPQVEPDDAKPLEQQQFIQLQDQFPFCGEPSSSN TVLQLSTLPPHLNSYHLHLGQSSFQWYVFERIIAAWLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	0	1
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	2.4	0.8729
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	4.9	0.8138
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	6.6	0.8353
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	7.7	0.8186
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	8.9	0.8150
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	9.9	0.8069
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	11.0	0.7976
AT3G19508			unknown protein		Lus10013875 [exp]	11.8	0.7504
					Lus10014515 [exp]	14.0	0.8152
AT5G46940			Plant invertase/pectin methyle...		Lus10043346 [exp]	15.2	0.7261

Compare expression of checked genes

Lus10017388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.