Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 556 / 0 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 553 / 0 Succinyl-CoA ligase, alpha subunit (.1.2) AT3G06650 96 / 2e-21 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 94 / 8e-21 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010187 [exp] 609 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 583 / 0 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 381 / 3e-134 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 386 / 4e-134 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 217 / 1e-69 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10017331 [exp] 172 / 4e-52 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 132 / 2e-37 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10010186 [exp] 124 / 3e-35 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1) Lus10028767 [exp] 117 / 6e-33 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 533 / 0 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 526 / 0 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 525 / 0 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 98 / 2e-22 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 93 / 5e-21 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.016G071850 [exp] 0 / 1 AT5G23250 0 / 1 Succinyl-CoA ligase, alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10017389 pacid=23140156 polypeptide=Lus10017389 locus=Lus10017389.g ID=Lus10017389.BGIv1.0 annot-version=v1.0 ATGGCTCGTCAAGCCACCAGACTCGTGGCGTCTTTGTCTTCCAAGCTTCGCTCTCCCACTCCCCAGATCACCCCCCTCTCCTCCCAAACTTTGTCGCAAT CGCGGTCCTTCGCTTCCGCTCCGCCTCTCCCTCCGGCAGTGTTTGTTGACAAGAATACCCGCGTCGTTTGCCAGGGAATCACCGGCAAGAACGGGACTTT TCACACCGAACAAGCCATTGAATATGGCACCAAGATGGTTGGAGGGGTGACACCTAAGAAGGGTGGCACGGAACATTTGGGCCTTCCTGTCTTCAACTCC GTCGCTGAAGCAAAGGCTGAAACGAAAGCTAACGCATCTGTGATCTATGTTCCTCCACCTTTTGCCGCTGCTGCTATTATGGAGGCTTTGGAAGCTGAAT TGGACCTAGTTGTTTGTATCACTGAAGGAATTCCTCAGCATGACATGGTACGGGTGAAGGCTGCCCTGAACCAACAATCTAAAACAAGATTAATTGGTCC AAATTGCCCTGGGATCATCAAACCTGGGGAATGCAAGATCGGAATCATGCCTGGATACATCCACAAACCAGGGCGTATCGGAATTGTTTCACGGTCTGGC ACATTGACTTACGAGGCTGTTTTCCAAACAACAGCAGTTGGTCTTGGACAATCCACCTCCGTAGGAATTGGCGGTGATCCTTTCAATGGGACAAATTTCG TTGACTGCATGGAGAAGTTCCTAGCAGACCCTCAGACTGAAGGCATTGTTCTTATTGGCGAGATTGGAGGTACTGCAGAAGAGGATGCCGCTGCTCTAAT AAAGGCAAGCAAGACCGAGAAGCCTATCGTTGCGTTCATCGCCGGACTGACTGCTCCACCTGGACGTCGTATGGGGCATGCTGGAGCTATCGTGTCGGGT GGAAAGGGAACTGCACAAGACAAGATCAGGACACTGAAGGAAGCAGGGGTGACCGTAGTTGAATCTCCGGCGAAGATAGGTACTGCCATGTTCAGTGTGT TCAAGGAAAGGGGTCTGGTCAATTAA
AA sequence Show only first row Show all	>Lus10017389 pacid=23140156 polypeptide=Lus10017389 locus=Lus10017389.g ID=Lus10017389.BGIv1.0 annot-version=v1.0 MARQATRLVASLSSKLRSPTPQITPLSSQTLSQSRSFASAPPLPPAVFVDKNTRVVCQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNS VAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVRVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSG TLTYEAVFQTTAVGLGQSTSVGIGGDPFNGTNFVDCMEKFLADPQTEGIVLIGEIGGTAEEDAAALIKASKTEKPIVAFIAGLTAPPGRRMGHAGAIVSG GKGTAQDKIRTLKEAGVTVVESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017389 [exp]	0	1
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	3.6	0.9190
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	8.9	0.9096
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	9.5	0.8886
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	15.2	0.8845
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	27.7	0.8841
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	28.6	0.8894
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	35.4	0.8697
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	38.5	0.8952
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	40.1	0.8801
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	42.1	0.8870

Compare expression of checked genes

Lus10017389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.