Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08290 290 / 1e-102 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT3G24730 94 / 4e-25 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010188 [exp] 294 / 3e-104 AT5G08290 293 / 4e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10022811 [exp] 98 / 7e-27 AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10011878 [exp] 95 / 2e-25 AT3G24730 258 / 1e-89 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010189 [exp] 91 / 1e-24 AT5G08290 87 / 4e-23 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072700 [exp] 293 / 6e-104 AT5G08290 293 / 5e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Potri.001G287600 [exp] 80 / 1e-19 AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02966 [flax] [poplar] DIM1 Mitosis protein DIM1
Representative CDS sequence Show only first row Show all	>Lus10017390 pacid=23140194 polypeptide=Lus10017390 locus=Lus10017390.g ID=Lus10017390.BGIv1.0 annot-version=v1.0 ATGTCGTACCTGCTACCACACCTGCACTCGGGATGGGCGGTGGATCAGGCGATTCTGGCGGAGGAGGAGCGGGTCGTCGTCATCCGCTTCGGCCACGACT GGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCGGGAGTTGCTGATACACTGAAGAACTTTGCGGTGATCTACTTGGTGGATATCACAGAGGTGCC TGATTTCAACACAATGTACGAGCTGTACGATCCATCGACTGTCATGTTCTTCTTCAGGAACAAGCATATCATGATCGATCTGGGAACTGGAAACAACAAC AAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATCGACATTGTCGAGACAGTTTACCGCGGGGCTAGGAAGGGGCGTGGTCTGGTTATCGCTCCTA AAGACTACTCGACCAAGTACCGGTACTAG
AA sequence Show only first row Show all	>Lus10017390 pacid=23140194 polypeptide=Lus10017390 locus=Lus10017390.g ID=Lus10017390.BGIv1.0 annot-version=v1.0 MSYLLPHLHSGWAVDQAILAEEERVVVIRFGHDWDDTCMQMDEVLAGVADTLKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	0	1
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	1.0	0.9018
AT1G56423			unknown protein		Lus10029844 [exp]	2.4	0.8988
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	2.4	0.8781
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	2.6	0.8740
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	3.9	0.8785
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	4.5	0.8814
AT2G44850			unknown protein		Lus10028204 [exp]	4.9	0.8734
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	5.2	0.8865
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	6.6	0.8639
AT4G35980			unknown protein		Lus10041889 [exp]	6.7	0.8697

Compare expression of checked genes

Lus10017390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.