Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 641 / 0 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 489 / 1e-170 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 469 / 4e-163 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 456 / 8e-158 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT4G15100 452 / 8e-156 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G61130 445 / 2e-153 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G17180 441 / 2e-151 SCPL33 serine carboxypeptidase-like 33 (.1) AT3G02110 439 / 6e-151 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G11080 437 / 4e-150 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT2G24010 435 / 5e-150 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010190 [exp] 928 / 0 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 479 / 2e-166 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 475 / 6e-165 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 464 / 7e-161 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 461 / 2e-159 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 445 / 4e-153 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10037810 [exp] 444 / 1e-152 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10018467 [exp] 436 / 6e-150 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10023505 [exp] 434 / 3e-149 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091700 [exp] 689 / 0 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091800 [exp] 563 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 507 / 7e-178 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 470 / 1e-163 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 454 / 3e-157 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 444 / 4e-153 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.001G261100 [exp] 441 / 2e-151 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.011G046600 [exp] 440 / 2e-151 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.008G041800 [exp] 438 / 6e-151 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.017G094100 [exp] 435 / 2e-149 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10017391 pacid=23140232 polypeptide=Lus10017391 locus=Lus10017391.g ID=Lus10017391.BGIv1.0 annot-version=v1.0 ATGGGTTCGGTTTGCCCGAACATTCTCCTCACAATGGCGGTGGTATGGATGGCCGTGTCGGTATCGGCGGCTGGTCTGAACGGGAACTGGAAAACAGAGC AGGAAGGAGACAGAGTGACGAGGCTGCCGGGGCAGCCGGAAGTGAAGTTCAAGCAATACGCTGGGTATGTTACTGTCAATGAAACCCACGGCCGAGCACT GTTCTATTGGTTCTTCGAAGCTACTCATAAACCTCAACGCAAGCCCCTCCTCCTCTGGCTCAACGGAGGGCCGGGATGCTCGTCGATTGGTTATGGCGAG GCCGAAGAGCTGGGACCTTTTTTTCCGACGAGGGGGGAACCTGAGCTCGCCTTCAACCCTCACTCGTGGAACAAAGCTGCAAATCTGCTGTTCCTTGAAT CCCCGGTCGGAGTTGGATATTCCTACACCAACACTACCAAGGACATCTCTCAACTTGGCGACACGATCGCAGCTAAGGACGCGTACATATTCCTCGTAAA TTGGTTCCGAAGATTCCCTCAGTTCCGCTCCCACGACTTCTACATCGCCGGAGAAAGCTATGCTGGACACTACGTGCCACAGTTGGCAGAGGCGGTGTAC GAAGGGAACAAGAACGCTTCCAAGGACGACCAAATCAACCTCCAGGGCTTGATCATCGGGAACGCGCTGTTGGACGACGAGACGGATCAGGAAGGGATGG TGCAGTACGCATGGGACCACGCGGTGATATCAGACAGAGTGTACAATGACGTGAAACGTTCGTGCAACTTCAGCCTCGACCAAGCGGGAGCAGCCTGCGA CTTTGCCTTGCAGGAGTACTTTAACGTGTACAAGCTCATTGACATGTACAGCCTCTATGCTCCCAGGTGCTTCAATGGCTCTTTCTCGAGTACTGGACAC CGGCAGCGACAACGTCCCTTTATTCGGGGCAATGTCTCGCCTCGTTTCTTCTCGAAGTTCGAGGCTTGGCACAACAAGGCACCAGCGGGGTACGATCCGT GCATATCGACCGTGACGGAGGAGTACTTCAACAGGAAAGACGTGCAGGAAGCTCTCCACGCTAATGTCAGCGGGAAGATTCCGTACACGTGGACCCACTG CAGCGACGTAATCCAGCTATGGGGCGACGCTCCCCATTCGATTCTCCACGTCATTAAGAAGCTCATCGCCGGCGGCCTCCGGGTCTGGGTCTTCAGTGGG GATACTGATGGGAGAATTCCGGTTACATCTACTCGGTTGACCCTGAACAAGCTCGGTCTCAACACGACCCAGGAGTGGGCTCCGTGGTACTTCAAACGCC AGGTGGCAGGATGGACGATCGAGTACGATGGATTGACATTCGTGACGGTCAGAGGAGCAGGACACCAAGTTCCGACATTTAAGCCACGACATGCTTTGGT GCTGATCAGGCGCTTCTTAGCAAACAAGCAAATGCCTTCCTCCCCTTGGCCCTCAACCAAATCTTAG
AA sequence Show only first row Show all	>Lus10017391 pacid=23140232 polypeptide=Lus10017391 locus=Lus10017391.g ID=Lus10017391.BGIv1.0 annot-version=v1.0 MGSVCPNILLTMAVVWMAVSVSAAGLNGNWKTEQEGDRVTRLPGQPEVKFKQYAGYVTVNETHGRALFYWFFEATHKPQRKPLLLWLNGGPGCSSIGYGE AEELGPFFPTRGEPELAFNPHSWNKAANLLFLESPVGVGYSYTNTTKDISQLGDTIAAKDAYIFLVNWFRRFPQFRSHDFYIAGESYAGHYVPQLAEAVY EGNKNASKDDQINLQGLIIGNALLDDETDQEGMVQYAWDHAVISDRVYNDVKRSCNFSLDQAGAACDFALQEYFNVYKLIDMYSLYAPRCFNGSFSSTGH RQRQRPFIRGNVSPRFFSKFEAWHNKAPAGYDPCISTVTEEYFNRKDVQEALHANVSGKIPYTWTHCSDVIQLWGDAPHSILHVIKKLIAGGLRVWVFSG DTDGRIPVTSTRLTLNKLGLNTTQEWAPWYFKRQVAGWTIEYDGLTFVTVRGAGHQVPTFKPRHALVLIRRFLANKQMPSSPWPSTKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	1.7	0.9108
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	3.5	0.8668
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	4.9	0.8711
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	5.7	0.8661
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	6.7	0.8631
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	6.9	0.8498
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	8.8	0.8511
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	9.8	0.8388
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	12.5	0.8535
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	14.1	0.8431

Compare expression of checked genes

Lus10017391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.