Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 476 / 5e-165 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 427 / 2e-146 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 416 / 4e-142 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G11080 413 / 1e-140 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G15100 413 / 2e-140 SCPL30 serine carboxypeptidase-like 30 (.1) AT3G02110 412 / 2e-140 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24000 409 / 2e-139 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT1G61130 404 / 1e-137 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G24010 402 / 5e-137 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G17180 395 / 5e-134 SCPL33 serine carboxypeptidase-like 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010191 [exp] 942 / 0 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 462 / 7e-160 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 459 / 7e-159 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 414 / 3e-141 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 412 / 2e-140 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10019954 [exp] 403 / 1e-136 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 399 / 5e-135 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 395 / 2e-133 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 388 / 3e-131 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091800 [exp] 534 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091700 [exp] 496 / 2e-173 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 453 / 1e-156 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 423 / 5e-145 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 422 / 1e-144 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 419 / 4e-143 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.011G046600 [exp] 419 / 4e-143 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G037800 [exp] 418 / 7e-143 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G120100 [exp] 413 / 9e-141 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.001G261100 [exp] 407 / 6e-138 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10017392 pacid=23140159 polypeptide=Lus10017392 locus=Lus10017392.g ID=Lus10017392.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCAGGTGCAAGGACGTTATCTCTGTGCCTGCTTCTGTGCTTGGTTGGTGTATCACCATCATGGGGAGCAATTGATCCGGAGACCATTGCAG CTCAATTTGCCGACCGGGTGGTCTACATTCCGGAGCAGCCTTCTGTTAACTTCCTGCAGTATTCTGGCTATATCACAGTTGATGAGAGCTACGGGAAGGC GCTGTTCTATTGGTTTTTCGAGGCAGCTCACAAGCCTGAAGACAAACCTCTTCTCATCTGGCTCAATGGGGGCCCCGGATGTTCTTCCGTTGGGTATGGA GCAGCACAAGAAATCGGACCGTTTTTGGTGAAGGAAGGACATGATATCCAACTCAACCCCTACGCTTGGAACAAAGGCAATTCCTTTTGTTCGTCCGGTT TGCTTCTGCATTCATCAGCTGCCAACTTACTGTTCTTGGAAGCTCCGGCTGGTGTTGGCTTTTCGTATTCGAACAACACTTACGTTCCAGGCGACACTGT CACCGCTTGGGATTCATACACATTCGTGAACAAGTGGTTGAAGAGATTCCCGCAGTTCAGAACCAATGAATTGTTTATAGCAGGGGAAAGCTACGCCGGG CACTATGCACCTCAACTTGCTGAAGTTATCTTTGATCAAAACAAGATATTTTACTCCCTCAATGACTCTTCTAATTACATCAACCTCAAAGGATTCATGG TAGGGAACCCATCACTGGACGAGGAATCCGACCGGAAAGGGATGATCGACTACGCATGGGGCCACGCGATGCTGTCGGATAAAGATTACCAGTCAATCTT ATCAAACTGCGACTTCACCAAACCCGACTCGAACCAAACCGACCAGTGTGCAACCGCCACTGCCAATTACAACCGACTATACTCAATCATAGACATGTAC AGTCTCAACTCTCCAACGTGCCATCAGTTTAGTAATTCCAGCCATGGCTTCCGCAGTCAACAGCCTAATTCCACATTTAAGATACCCGCCGGAGGCGGGT CCGGGTACGATGCATGCACCAGCAACTATGTTTTCGAGTATTTCAACCAACCAGCCGTGCAGGAAGCGTTGCATGCAAATGTCACCCAACTCTCTCGCCC TTGGGATCTTTGCAGTGATACGGTGAACAATGAGTGGAATGAAAGTGCGTTCTCGGTGCTTCCTGTGATTAGGAAGCTGCTTGATGGAGGCCTCCGCATT TGGTTCTACAGCGGAGATGCAGATGCTAGGATACCAGTGACATCAACGAGGTACAGTCTGAACAAGCTTGGACTAAACATCACCCAAGACTGGACACCTT GGTACCACAAAGATGAGGTAGGAGGATGGACGATAAAGTACGAGGGAGGGTTGACGATGGCGACGGTGAGAGGAGCTGGTCACGCAGTGCCTGTACTCGC ACCCGACAGTGCTCTCCTTCTCGTATCTCGTTTCCTCGACAACATCGACTTGCCTCGATCCTAG
AA sequence Show only first row Show all	>Lus10017392 pacid=23140159 polypeptide=Lus10017392 locus=Lus10017392.g ID=Lus10017392.BGIv1.0 annot-version=v1.0 MGVSGARTLSLCLLLCLVGVSPSWGAIDPETIAAQFADRVVYIPEQPSVNFLQYSGYITVDESYGKALFYWFFEAAHKPEDKPLLIWLNGGPGCSSVGYG AAQEIGPFLVKEGHDIQLNPYAWNKGNSFCSSGLLLHSSAANLLFLEAPAGVGFSYSNNTYVPGDTVTAWDSYTFVNKWLKRFPQFRTNELFIAGESYAG HYAPQLAEVIFDQNKIFYSLNDSSNYINLKGFMVGNPSLDEESDRKGMIDYAWGHAMLSDKDYQSILSNCDFTKPDSNQTDQCATATANYNRLYSIIDMY SLNSPTCHQFSNSSHGFRSQQPNSTFKIPAGGGSGYDACTSNYVFEYFNQPAVQEALHANVTQLSRPWDLCSDTVNNEWNESAFSVLPVIRKLLDGGLRI WFYSGDADARIPVTSTRYSLNKLGLNITQDWTPWYHKDEVGGWTIKYEGGLTMATVRGAGHAVPVLAPDSALLLVSRFLDNIDLPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017392 [exp]	0	1
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010191 [exp]	1.0	0.8474
					Lus10027784 [exp]	4.6	0.7712
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	5.3	0.7027
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	8.4	0.7590
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	10.2	0.7863
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	15.1	0.7680
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	15.2	0.7539
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	15.3	0.7569
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	19.9	0.7312
AT1G57540			unknown protein		Lus10024000 [exp]	22.6	0.7504

Compare expression of checked genes

Lus10017392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.