Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23200 557 / 0 unknown protein AT5G08270 449 / 2e-156 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010192 [exp] 810 / 0 AT5G23200 558 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092000 [exp] 584 / 0 AT5G23200 544 / 0.0 unknown protein Potri.005G092100 [exp] 443 / 2e-154 AT5G23200 396 / 5e-137 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017393 pacid=23140231 polypeptide=Lus10017393 locus=Lus10017393.g ID=Lus10017393.BGIv1.0 annot-version=v1.0 ATGACCAGATATGAGGCCCGTTTGAGCAGCTTCTTTCAGGCCTATGAGCCCATAAACTATCTAAAAGGCCATTGCACTCGTAGTTCACTTGAGACTTCAG AGCCCAGAAACAAAATTTTCTCAGTCGATCAGCTCCTGAGACGGCATCACTCACAGTCGAAGGCAAGCACCGGCACCAGCTTCAGCAGCTCAGAGGAACG AGAAGGAAGGTATTTATTCCGGTCTGCAGCTGGCCTTCTCCCGTCAATGGCGTATCTCTTCAACAAATTCTATGCGGGGGTAAAAGTTCTAGCGAAGAGC CCTACGTTCGCTAGGGATCCAAGGAAAATGCAATTTGAAGCGGACATCAATCGCCTCTTCCTCTATACATGCTACAATCGGTTAGGTAGGACTGCTGAAG AGGCTGACGTGGATGAGGTCATTGAGATGGCGAATAAAGCTTCTGTTGATGATCAGCAGAAGCAAGTGCAGGAAAACATCCATTATCAGATTAAAAAATT CTCCACGGTTATGGATGACATTCTTCTTCCTGATGTTACTAAAGGTGATGAATCAGGTGGAATTCCTACGAAAGCAGATGCTCCCCCTCGCCGTAGTGGC CTTAGTTTGGCTGTTGGCCAGAAGGGACCATCTGCTAATCATAAAGCGATTCCCGAGACGAAACCCTCAAAGCTTTCTGATGTCTCGTTGAGAGTAAAGG AGAGTATTGGCTACACGCTTGATCTTAGACCATCTCAGATACCTCACGAGGAAGCTGGAACTGGATTGTTTGTGAATGGTGAGGCTGATGTTGGCAGTGT CATTGCGTTCTACCCTGGAGTTATTTATGCCCCTGCTTACTACCGGTTCATCCCTGGGTACCCGAGGGTTGATGCACAGAATCCTTACTTGATCACGAGG TATGATGGAACCGTGATCAATGCTAAGCCGTGGGGTCCTGGGGGTGAAATGCGTGAACTATGGAATGGGTCAAAAGTTCCAGAAAGTCAGCCTAGCTTAG AGAGCAATGAGAAAGGAGCAGATCGGTTGTGGAAAAAGCTCAGCAAGCCTGTGGAAGGGGCACGCTTTAGTGCTGTTGGTGAGATTCTTGAGAGAAGGAA TCCACTGGCTTTGGCTCATTTTGCAAACCACCCTGCAAGGGATATGGTTCCTAATGTCATGATTTGCCCTTATGACTTCCCGCTAACTGAGAAGGAGATG AGGGCTTATGTACCCAATATTTCATTTGGGAATCCAGAAAAAGTAAGTATGAGAAGATTTGGAAGTTTTTGGTGGAGAACCGGGTCAAAAGAAGATGGTT CTGATGTTCCCACTCTAAAGGGACTTGTCTTGGTGGCGACCAGGGCCCTCTGTGATGAAGAAGTTATGTTGAATTACAGATTGAGCAACACAAAGCGCAG ACCAGCATGGTACACTCCCGTGGATGAAGAGGAAGACCGAAGGAGATGGAGTTAA
AA sequence Show only first row Show all	>Lus10017393 pacid=23140231 polypeptide=Lus10017393 locus=Lus10017393.g ID=Lus10017393.BGIv1.0 annot-version=v1.0 MTRYEARLSSFFQAYEPINYLKGHCTRSSLETSEPRNKIFSVDQLLRRHHSQSKASTGTSFSSSEEREGRYLFRSAAGLLPSMAYLFNKFYAGVKVLAKS PTFARDPRKMQFEADINRLFLYTCYNRLGRTAEEADVDEVIEMANKASVDDQQKQVQENIHYQIKKFSTVMDDILLPDVTKGDESGGIPTKADAPPRRSG LSLAVGQKGPSANHKAIPETKPSKLSDVSLRVKESIGYTLDLRPSQIPHEEAGTGLFVNGEADVGSVIAFYPGVIYAPAYYRFIPGYPRVDAQNPYLITR YDGTVINAKPWGPGGEMRELWNGSKVPESQPSLESNEKGADRLWKKLSKPVEGARFSAVGEILERRNPLALAHFANHPARDMVPNVMICPYDFPLTEKEM RAYVPNISFGNPEKVSMRRFGSFWWRTGSKEDGSDVPTLKGLVLVATRALCDEEVMLNYRLSNTKRRPAWYTPVDEEEDRRRWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23200			unknown protein		Lus10017393 [exp]	0	1
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	2.4	0.7932
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	4.5	0.8119
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	6.0	0.7826
AT5G01910			unknown protein		Lus10035364 [exp]	9.2	0.7508
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028943 [exp]	9.6	0.7043
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	11.8	0.7823
AT3G49990			unknown protein		Lus10015447 [exp]	16.7	0.7821
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	16.8	0.7598
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	22.0	0.7452
AT3G07190			B-cell receptor-associated pro...		Lus10025914 [exp]	23.4	0.7380

Compare expression of checked genes

Lus10017393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.