Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23190 739 / 0 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 693 / 0 Cytochrome P450 superfamily protein (.1) AT1G24540 481 / 1e-165 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT3G26125 473 / 5e-162 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT1G13140 469 / 1e-160 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT1G63710 452 / 2e-154 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G13150 450 / 3e-153 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT2G45970 446 / 1e-151 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G01600 443 / 3e-150 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 441 / 2e-149 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010193 [exp] 1024 / 0 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 798 / 0 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 432 / 2e-145 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10006232 [exp] 421 / 2e-141 AT1G24540 524 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Lus10018217 [exp] 409 / 2e-137 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 408 / 5e-137 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 405 / 8e-136 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10014768 [exp] 419 / 3e-134 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10002527 [exp] 399 / 1e-133 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072100 [exp] 758 / 0 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 734 / 0 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.010G050100 [exp] 508 / 7e-176 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 496 / 2e-171 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.014G085800 [exp] 455 / 7e-155 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 431 / 2e-145 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 426 / 4e-144 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 418 / 5e-141 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 404 / 9e-136 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 404 / 2e-135 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017394 pacid=23140178 polypeptide=Lus10017394 locus=Lus10017394.g ID=Lus10017394.BGIv1.0 annot-version=v1.0 ATGGCTCTTCTCACTTCTTCACACCACCCTCCTCACCCCGACACCATGACCACCACCGTCCCCGCCGCCCCCATCCATAACATCCTTCGTGACATCCACC TCCTCGAGCTCGTCATCGCCCTGGTCGTATTCGTCACCATACGCTCCCTCCGCAAAAGGACCCGCCACGGCCTCCCCATATGGCCCTTCCTAGGCATGCT GCCTTCTCTGTTCTCCGCCTTACAAGGCGACAAGAACGTCTACGAGTGGCTCACCGACATCCTCCGCCGCCTAAACGGCACCTTCCTCTTCAAAGGCCCG TCTTTAAGCTCCCTCAACTGCGTCGTCACTTCCGACCCGCGCAACCTCGAGTACTTGCTAAAGACCAAGTTCTCCAACTTCCCTAAGGGGCCCTACTTCC GTGGCAACCTCCGTGATCTTCTCGGCGAGGGCATCTTCAATGCGGATGGAGCCACGTGGAACAAGCAGCGGAAGGCTGCGAGCCTCGAGTTTCACTCCTC GAGGTTCCGGAAGCTTACTTACTCGTCCCTGTTCGAGCTTGTCCATGCTAGATTGCTCCCTGTCCTGCTCGAAGCCTCTTCCTCGAAACGAAACGTTTCG ATCGATCTCCAGGATATACTGTTGAGGCTCACATTCGACAACGTGTGCATGCTCGCATTCGGAACAGACCCTGGTTGTCTAAGTCTGGGTCTTCCCAAGG TACAATTCGCTCGTGCATTCGAGGACGCCACGGAAGCCACCGCATTAAGGTTCGTGATGCCAACATGTCTGTGGAAGGCGATGAGGTGGATGGACATCGG AAGCGAGAGGGTGCTCAGAAAGTCGATCGAGGGAGTCGACAATTTCGCGGAGGAAGTGATCCGAGCTCGGAAGAAGGAGCTGGCATTACTGGACGATGAC GTGGACAGCCACCTGGCCATCAAGAGGTCCGACATACTGACGGTGTTCATGGGGATGAAGGACGAGGAAGGGAAAGCGTATACGGAGAAGTTTCTAAAGG ACATATGTGTCAACTTTATATTGGCTGGGAGGGACACGTCATCGGTGGCGCTGAGCTGGTTTTTCTGGTTGGTTGATCGGCATCCGGAGGTGGAAGATAA GATTCTGAAGGAGATTCGGAGGATAGTGAAGGAGAGGGAACCGGAGATGATGGACGGTGGAGATGAAGTCATGCTGAAGCCGGAGGAAATCAAGAAGATG GATTATCTTCAGGGTGCTCTGTCTGAAGCTTTGAGGCTTTACCCTTCCGTTCCCGTTGATCACAAGGAGGTGTTGGAGGATGACGTGTTTCCAGACGGGA CGGTGCTGAAGAAAGGGACCAAGGTGCTCTACGCAATCTACTCAATGGGGAGGATGGAGTCCATCTGGGGGGAAGACTGCAGGGAGTTCAAGCCAGAGAG GTGGCTGAGGGACGGCAGGTTCACGAGCGAATCGGCCTACAAGTTCACTGCTTTCAACGGAGGGTCCCGGCTGTGCCTGGGGAAGGACTTTGCCTACTAC CAGATGAAATTCGTGGCGGCTTCGATCATGTACCGGTTCAAGGTGAGAGTCGTGGAGGGTCACCCTGTCACGCCGAAGCTCGCCTTGACCATGTACATGA AACACGGGCTCAAGGTGAATCTGTCCAGGCGTGAAGGTGATGTTGATGATGAAACATCTGTTGATAATCAGGTTCAGAAGTCTGAGAAGGAGATGTACAG TCAGTAA
AA sequence Show only first row Show all	>Lus10017394 pacid=23140178 polypeptide=Lus10017394 locus=Lus10017394.g ID=Lus10017394.BGIv1.0 annot-version=v1.0 MALLTSSHHPPHPDTMTTTVPAAPIHNILRDIHLLELVIALVVFVTIRSLRKRTRHGLPIWPFLGMLPSLFSALQGDKNVYEWLTDILRRLNGTFLFKGP SLSSLNCVVTSDPRNLEYLLKTKFSNFPKGPYFRGNLRDLLGEGIFNADGATWNKQRKAASLEFHSSRFRKLTYSSLFELVHARLLPVLLEASSSKRNVS IDLQDILLRLTFDNVCMLAFGTDPGCLSLGLPKVQFARAFEDATEATALRFVMPTCLWKAMRWMDIGSERVLRKSIEGVDNFAEEVIRARKKELALLDDD VDSHLAIKRSDILTVFMGMKDEEGKAYTEKFLKDICVNFILAGRDTSSVALSWFFWLVDRHPEVEDKILKEIRRIVKEREPEMMDGGDEVMLKPEEIKKM DYLQGALSEALRLYPSVPVDHKEVLEDDVFPDGTVLKKGTKVLYAIYSMGRMESIWGEDCREFKPERWLRDGRFTSESAYKFTAFNGGSRLCLGKDFAYY QMKFVAASIMYRFKVRVVEGHPVTPKLALTMYMKHGLKVNLSRREGDVDDETSVDNQVQKSEKEMYSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	2.6	0.9635
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	4.0	0.9519
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	4.5	0.9548
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	6.0	0.9528
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	6.3	0.9385
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	7.0	0.9403
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	8.1	0.9494
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	8.1	0.9458
AT3G11600			unknown protein		Lus10043404 [exp]	9.1	0.8613
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	12.6	0.9346

Compare expression of checked genes

Lus10017394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.