Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23160 59 / 2e-10 unknown protein AT5G08240 55 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010194 [exp] 280 / 1e-93 AT5G23160 90 / 3e-20 unknown protein Lus10013437 [exp] 99 / 9e-25 AT5G23160 82 / 5e-18 unknown protein Lus10040984 [exp] 92 / 8e-22 AT5G08240 89 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092400 [exp] 68 / 2e-13 AT5G08240 100 / 9e-25 unknown protein Potri.007G071900 [exp] 65 / 3e-12 AT5G08240 92 / 2e-21 unknown protein Potri.001G408900 [exp] 47 / 3e-06 AT5G08240 52 / 1e-07 unknown protein Potri.019G119000 [exp] 43 / 9e-05 AT5G08240 52 / 1e-07 unknown protein Potri.013G149300 [exp] 40 / 0.001 AT5G23160 56 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017395 pacid=23140274 polypeptide=Lus10017395 locus=Lus10017395.g ID=Lus10017395.BGIv1.0 annot-version=v1.0 ATGAAGCAGTTTCCTCTGTGGCTGCCGCCAGCGAAGTCCCTACATCAGATGGAGCAGCGGCCGGCGAATCATTTCCTAAAGAGGTTGACAATTACGACCG GCTCACCGGAAAAGGACAACATAGTCGTCGGAAGCCGGAACTCTTCGGGACATACGGAGGAGAAGGCACCAAATCGTGCCACGTGCAAAACGCGGTTTCC ATTCTGCCGGAACAGAGCCGAACTCAACTCCACATCAGCTAATACCGGGTCAAGTATGAGCCAGCCGGGCACACCCGTACCCAACAAACACAATCCAAAC GGCACCGTTTCGATTTCTCGGTCAACTACATTCCCGGGGCCGGAACATCTCGACCGGAAACCGGTTCAGCTACTTCGACCGCCGATCGTGGATAACAAAC CGGCGAAATTGGACTCGGTGGTGGGGCTGTTGATTTTAACGGTGACGTTGGTGATCATGGTGGTTTTGGGTCGGTTCTGTGCCATTGTTTGCACGGCGGC TTGGTTGTATTTTATTCCGCGTTTGAGGACGACCATGCCCGCCGGCGCCGAGGTCAAAGTCAAGGCTAACGGTGGCAGGATGAATACGACTGAGTCGTAC GAGTCGGGTGGTGGTTCGAGCCAAGCGACGGATTTGGATTCGGTTGAATACAAGAGAAGAGTGGTGTTGGAAGGTCTTCTCGAAAGGAAGCGACGCCTCA TTGCTTGA
AA sequence Show only first row Show all	>Lus10017395 pacid=23140274 polypeptide=Lus10017395 locus=Lus10017395.g ID=Lus10017395.BGIv1.0 annot-version=v1.0 MKQFPLWLPPAKSLHQMEQRPANHFLKRLTITTGSPEKDNIVVGSRNSSGHTEEKAPNRATCKTRFPFCRNRAELNSTSANTGSSMSQPGTPVPNKHNPN GTVSISRSTTFPGPEHLDRKPVQLLRPPIVDNKPAKLDSVVGLLILTVTLVIMVVLGRFCAIVCTAAWLYFIPRLRTTMPAGAEVKVKANGGRMNTTESY ESGGGSSQATDLDSVEYKRRVVLEGLLERKRRLIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23160			unknown protein		Lus10017395 [exp]	0	1
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014083 [exp]	1.4	0.9728
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	2.4	0.9708
AT4G06534			unknown protein		Lus10024806 [exp]	2.6	0.9668
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	3.6	0.9594
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	3.9	0.9698
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	4.2	0.9604
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	4.9	0.9674
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	4.9	0.9691
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	6.3	0.9687
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	7.5	0.9605

Compare expression of checked genes

Lus10017395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.