Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23150 396 / 4e-115 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 347 / 4e-98 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 203 / 2e-52 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 198 / 7e-51 Tudor/PWWP/MBT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010197 [exp] 2101 / 0 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10013433 [exp] 1025 / 0 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 966 / 0 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 179 / 4e-45 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10042690 [exp] 131 / 2e-30 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1) Lus10014546 [exp] 47 / 0.0001 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 47 / 0.0001 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10026725 [exp] 45 / 0.0008 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092700 [exp] 776 / 0 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 746 / 0 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.014G138700 [exp] 201 / 9e-52 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 46 / 0.0002 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0020 [flax] [poplar] TPR PF12243 [flax] [poplar] CTK3 CTD kinase subunit gamma CTK3
Representative CDS sequence Show only first row Show all	>Lus10017398 pacid=23140241 polypeptide=Lus10017398 locus=Lus10017398.g ID=Lus10017398.BGIv1.0 annot-version=v1.0 ATGGCTCCGGGGCGTAAAAGAGGAACGAGTAAGACCAGGGGGAGGAATCAGCTCAGTTTGGGCGATCTTGTTATTGCTAAAGTTAAGGGCTACCCTTATT GGCCTGCAAAGATATGTCGGCCTGAAGACTGGAAGAAGACGCCTGACCCTAAGAAACATTTTGTTCACTTCTTTGGGACTCAAGAAATAGCTTTTGTTGC ACCTTCTGATATCCAAGTATTCACAAATGAAGTTAAGGCCAGGTTGTCTTCTAAGTGTCAAGCTAATAGTAAATTTACTCAAGCGCTGAAGGACATATCC GCAGAATTTGAGAACTTACAAAATGAAGATTCAAGTCTTGATGATGGGACAGAAGGAGAGGCTGACTTGAATGGTGACATTTCTAGATTGAATGGAGAAA CATCAGAAGATGCAAGTGATTTCAGATCCAAGGTAGACTATTCCTTGGGAAGTGAATTTGAGGATTCAAAACCTTCTGATTCATGTCACGGAGAAAGCCC AGTCCAGGCTACATCTTCGGGAAAGAAATGTGATGATGAGCAGTTGCAGGAGGTAGTATCTGGTCCTACGATGAATGCAGATGGTGCAAATGAAATAAAT GGTAATGAGTCTGAGATGCATACTGGTCATGTTAATACATCTGGGGCTTCTGTAAAAGGGCATAGAAGCACGAGCTCAGGTAAGGTGGAAGATGTGAAAC CTGATGTTTCCTTAAGTGCCGAGAAGCAACTGGAAAACAGGGTGAAAGGGAAAATTGGTTCTGTGAGAAGTGATGGTGATTCCTTAAAATCTGGAAAAGG GAATAAAGGTTTAGAGATGCAGGAAGCTAAAACAAATGGAAAGACAGCTGAGGGAGTGGATAAAAAAGAGAAGAGTGCCGCACCTGGACTTGGGAGCTCC AAGGTGCATGCTATTGATACTTCTCATCCTGCTAAAAGATTGAAGTTTGAAGAAGTGGCATCCCATGATGATTCTGTAGGCGCTAATGCTTCTGGTGATA AGTTTTCTTTGGTTTATGCCAAAAGAAAGGTTCATTCAGGACCAAGAGCCCAACAAAATAAGGTGAAGGCAGATCCTTCTGATCAATTAGGTCAATCCAA AGTTGGCATTTCATCCATATCAGGTGAAGGAAAACTGGAGGCAACCACTCGAAAATTTTGGGTAAAATCAGATGCATCAGTGGAATCTGATAAACTTAAG TCTGATGCATCTCAAGTGATGCATAAAGTGAATTCCAGTTCATCAGCACATACCAGTAAAGTTAAGTCTGATTCGTGTGCTCAGATGAAGAGCGTCAGAT CCAATCTGACTTCCAGTATGGGTAAAACAAAAATGAATGATATTCATAAGGCACATGCTACCGCTGATACTGAGGATGCGTTCCCATCCTCAAAACGTCG TCGTCAAGCTCCAGAGCTGATTACTGGTCCTGTTCACAATTCAGAAGGTAGAATGGAGAAAACCCCTTCTCGGCTGAAGAATCACTTGTCTTCTAGTAAT TCTAGAGATCGCATCAGCCATAACCCAAAAAGGCGAAGAGCTGTATGCCTTTTTGACGAGGAGGAAGACAATGAAAAACCTAAAACTCCAGTTCATGGGG GCTCTGCAAGAAGCGTTAGACCTCCTTTTGCTGTTACTGATGATTCCAAGCATAGTGACAGACAGATTGGAGGTTCTCATGATAAACTAGATGGATCTGC AGCTAAATCTCGCTCAAATGTGGAGGAGTCTACTACTCATCATGATAGTTTGAAGGATTCTGTGCTCTTGCAAAAAAATTGTTCTGCCCGCCTGCCAAGA ACTGTGAGGACACCAAGTGCCCCTGATTCACGGAGTCCAAAAGAGGATGAAAAGCAGTTAAAAACCGAGGAGGTTAAAGTTATCCTGACTTCTCCAAAGA CGTTTTCTCAACCACTTGCTCCCAAAGCAGTGTTGCAGCAGCATAAAACCAGTAAGGATGAAAAGCAATTAATGACCGAGGAGGTTAAAGTTATCCTGAC TTCTCCAAAGATGTCTTCTCAGCCACTAGCTCCCAAAGCAGTGTCGCAGCAGCATAAAACCAGTAAGGATTCTGTAAGGACTTCTTCTGGTGCTCAGAAG AAATCCCAGGTTACAATTGGCGAGCCCTCGGGGCGGGTTCTTGATGTTGCAAAAGCTTCACAGAGTCATGTGACAGTGCAAAAAAATAGGCTGACTCCTT CTGGAGAGAGACCTAAAACTAATCCAAGAGTATCATTACGCATGGGTGATAATACCATTTTGCTGGAAACTCCAATGGAAGTTGATGCTGCTGCAAACGA GAGAAGCTTGTCATTGGTTGGTTCTAAGACTCCAGATTCTGCTACATCTATGAGGCACTTGATTGCTGCTGCACAGGCAAAGAGAAAAGAAGCTCATTCG CAACCTTTACCTCTTGGAAACTCCAATTATGGTCTTTTGTCCATCAGTGACAGTCATGGACGGAATACTAGTCCATCCGCTGTCCAACCCTTACTATCTG ACACATCCAATGTGATGCAGCCTGATGGACCAGGGTTTCATGATCATCAAAATGTAACTCCATCTACTCAGACTCATCCTTCAGGGTCCCATAATCGAAC AGAAAATGAAGAGCTGGAAGTTCGAAGGGTCAGTTCTGAAGGTGGGGTTTTGCGGGGTTCACTTAGTGGTGGCATGGAGGCAGCAGTATCACGTGATGCT TTGGAAGGGATGATAGAGACTTTGTCTAGGACAAAAGAAAGTATAGGGCGCGCTGCTCGTCTTGCCTTGGATTGTGCAAAATATGGAATTGCCAATGAGG TCGTAGAGCTTCTGATCAGAAAGCTAGAAAGTGAACCCAGTTTGGATCGCAAAGTGGACTTACTCTTTCTTGTGGATTCAATCACCCAGCGTTCACATAA CCATAAAGGTGTTGCTAGAGCTTCATACGTACCAACCATCCAGGCTGCATTACCACGTCTTCTGGGTGCTGCTGCACCGTCTGGAGCTAGTGCAGGGGAG AATCGCCGTCAATGTCTGAAGGTGCTGAGGCTATGGCTTGAGCGTAAAATCTTTCCTCAATCTGTATTGAGGCGTTTTATGGATGATATTGGGGGTTCAA ATGAAGTCCGTGAAGGCACCACTTGTGGATATTCTTTCAGACGTCTATCCCGTTCTGAGCGTTCCGTAAACGACCCTATCAGAGAAATGGAAGGGATGGA TGTGGATGAGTATGGCAGTAATGCTACATTTCAGTTGCCTGGCTTTCTATCATCGAACATATTTGAAGACAAAGATGATGATCTGATAACTGGATTACCA AAGGAAGTGGGGGACATGCCGGCAGTGTCCGAACCAGGTCGCACACTAGGAGATTCAGAAATAGATGCTGCTACTCCCAGCGACAGACCTCATTTTATCT TGGAGGAAGTTGATGGTGAGCTTGAAATGGAAGACGTATGTTATCCTCATCTCATGGATGAAGGACCTGACATGGATATAGAAGAGAATTGCTCTGACAG GGCGATGGGGCCTACATCAGACAGTAATGTCGACTCACCATTTTCCCTAGAGGGTTCACCACCGCTCCCACCCGGTTCTCCTCCCAAACTCCCACCTTTG CCACCCTCTCCACCACCTCCTCTGCCTCCACCACCATCAAGCTCTCCTCTGCCCCCGCCTCCTCCACCACCATGCTCCCCTTCTCAGCCCCCACCTCCTC CACCATCATCGCCACCTCTTCCAACACAGCTTCCTCCTGGTCCTCAGCCATCGTTGGTACTTCAACACTCGCTGCCAATTCATCCTTCCCAGCAGTCTCG GTCTCTAATATCAACACATTCACCTATACAGTCACCACAACTGGCGTATCAGCAGGCTGTTCCTCATGAATATTATGGTTTATCCAGTGTTAACAACATT TTCCAAATAGCTGGAAATGCTCCTCGATCTGAACATATGGATCCAAGCCACCTGCTTTTACCTTCAGCAGTTGGCAAACCCTGTGAAACTCTGGGATTCA GCTCTTCAAGACATTTGGAGTATGCCGAGGATGAGATGTACTCAAAACCTCAATTTAAGCAGGGCAATGCTTCGTTTGTATCCAGACCTCTGAATCCAAG TCACCCTCAAACAATATCCGGCCATTTTCAGTTTAAAAAGGCAGTGATTCAGCAGCATAACCAGCAGCAGTCCTATCCCCATCAATACCCTACACCATCT CATCATGAGGGACATAGGCGATTTGTTGGTGATGGTAAGCGGAGGAGGTCGTTGAATGAACTTAATCCTAATAATCAACACAGTGGATGGATGACTGGAA GAACTGCAACACATGCAGGTCGTTCCAATGGCCAAGAAGGCTTCTTTCGGACTTCAGTTGAGAGGCCACCGGCAAATGCTGTTGCTGTTCAATTCCCTAC TAATAGCAATTTACCCGCCGCACCTCCAATTTCAGCCGACTCTGATTGCGCTATTGCAGGCCGTGCGGTTAATCGCTGGAGGCCATCTTAA
AA sequence Show only first row Show all	>Lus10017398 pacid=23140241 polypeptide=Lus10017398 locus=Lus10017398.g ID=Lus10017398.BGIv1.0 annot-version=v1.0 MAPGRKRGTSKTRGRNQLSLGDLVIAKVKGYPYWPAKICRPEDWKKTPDPKKHFVHFFGTQEIAFVAPSDIQVFTNEVKARLSSKCQANSKFTQALKDIS AEFENLQNEDSSLDDGTEGEADLNGDISRLNGETSEDASDFRSKVDYSLGSEFEDSKPSDSCHGESPVQATSSGKKCDDEQLQEVVSGPTMNADGANEIN GNESEMHTGHVNTSGASVKGHRSTSSGKVEDVKPDVSLSAEKQLENRVKGKIGSVRSDGDSLKSGKGNKGLEMQEAKTNGKTAEGVDKKEKSAAPGLGSS KVHAIDTSHPAKRLKFEEVASHDDSVGANASGDKFSLVYAKRKVHSGPRAQQNKVKADPSDQLGQSKVGISSISGEGKLEATTRKFWVKSDASVESDKLK SDASQVMHKVNSSSSAHTSKVKSDSCAQMKSVRSNLTSSMGKTKMNDIHKAHATADTEDAFPSSKRRRQAPELITGPVHNSEGRMEKTPSRLKNHLSSSN SRDRISHNPKRRRAVCLFDEEEDNEKPKTPVHGGSARSVRPPFAVTDDSKHSDRQIGGSHDKLDGSAAKSRSNVEESTTHHDSLKDSVLLQKNCSARLPR TVRTPSAPDSRSPKEDEKQLKTEEVKVILTSPKTFSQPLAPKAVLQQHKTSKDEKQLMTEEVKVILTSPKMSSQPLAPKAVSQQHKTSKDSVRTSSGAQK KSQVTIGEPSGRVLDVAKASQSHVTVQKNRLTPSGERPKTNPRVSLRMGDNTILLETPMEVDAAANERSLSLVGSKTPDSATSMRHLIAAAQAKRKEAHS QPLPLGNSNYGLLSISDSHGRNTSPSAVQPLLSDTSNVMQPDGPGFHDHQNVTPSTQTHPSGSHNRTENEELEVRRVSSEGGVLRGSLSGGMEAAVSRDA LEGMIETLSRTKESIGRAARLALDCAKYGIANEVVELLIRKLESEPSLDRKVDLLFLVDSITQRSHNHKGVARASYVPTIQAALPRLLGAAAPSGASAGE NRRQCLKVLRLWLERKIFPQSVLRRFMDDIGGSNEVREGTTCGYSFRRLSRSERSVNDPIREMEGMDVDEYGSNATFQLPGFLSSNIFEDKDDDLITGLP KEVGDMPAVSEPGRTLGDSEIDAATPSDRPHFILEEVDGELEMEDVCYPHLMDEGPDMDIEENCSDRAMGPTSDSNVDSPFSLEGSPPLPPGSPPKLPPL PPSPPPPLPPPPSSSPLPPPPPPPCSPSQPPPPPPSSPPLPTQLPPGPQPSLVLQHSLPIHPSQQSRSLISTHSPIQSPQLAYQQAVPHEYYGLSSVNNI FQIAGNAPRSEHMDPSHLLLPSAVGKPCETLGFSSSRHLEYAEDEMYSKPQFKQGNASFVSRPLNPSHPQTISGHFQFKKAVIQQHNQQQSYPHQYPTPS HHEGHRRFVGDGKRRRSLNELNPNNQHSGWMTGRTATHAGRSNGQEGFFRTSVERPPANAVAVQFPTNSNLPAAPPISADSDCAIAGRAVNRWRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	0	1
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	1.4	0.9557
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	1.7	0.9479
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	2.0	0.9497
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	2.8	0.9327
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	3.0	0.9312
AT5G07940			unknown protein		Lus10021162 [exp]	4.2	0.9361
AT2G25730			unknown protein		Lus10007687 [exp]	4.5	0.9383
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	4.9	0.9238
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	5.1	0.9222
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	5.5	0.9286

Compare expression of checked genes

Lus10017398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.