Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08200 218 / 2e-68 peptidoglycan-binding LysM domain-containing protein (.1) AT5G23130 196 / 2e-60 Peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010198 [exp] 491 / 2e-174 AT5G08200 277 / 9e-89 peptidoglycan-binding LysM domain-containing protein (.1) Lus10040979 [exp] 320 / 4e-109 AT5G08200 257 / 1e-82 peptidoglycan-binding LysM domain-containing protein (.1) Lus10013432 [exp] 314 / 7e-107 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092800 [exp] 237 / 7e-76 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G071500 [exp] 236 / 1e-75 AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.012G036600 [exp] 196 / 2e-60 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017399 pacid=23140189 polypeptide=Lus10017399 locus=Lus10017399.g ID=Lus10017399.BGIv1.0 annot-version=v1.0 ATGGCATGCTTTAAGGATGATCATCATGCTAGCTTCTGCAGAATGTTGGGACTGGTGGCCGATGTAAAAAAGAGGAATGGTCTCATTACTGATCATCAAA TGTTTGCCCTGAAGACACTCAAGATACCTCTACCTGGGAGGCATCCGCCATCACCCTGTTTATCAAATGGTTCCGAATCCGCAGGTGGGAGCAACTGTGA ACGTACACCTAATCCGCTTGATTCATTCCAATCCTTAAGACCGAAGTCATCATCCGGACATAAAGTCTCTCCTGCAATGAGCTCTTTGCAGGGCTTCTAT GGCCTTACTCCTGCCGATCGAAGACAAAGCTTGAATCTTTCTCCAGATTCCAACCCTCCTGTAACCCACCACCGGAAGTCCAGAAGCTACGTCAACGTTT TCCAAGTCGAGAAGGATGGAACCGACAGTGACTCAATAGTAAGAAGGCGTCAGAAATCAGAAGTTGACTTCCCAAATATGCTGATGAGGGAAGAAAACAG CAACGGAGGCAAGGTATCACTAACAGGTAAAGGGTTAGCTCTAAGACCGAAATCAGCAAATCGCAGCGGGTTAATATTAGACCCAGATTCAGCAGCAGCT AGTGTGGTCCCAAATACAGGGGATCCCGACGCAGAGGCCGATCCCATCTCGGCTGTGAGGAAGTCGTCGAGCGCATCGAGCTTGAACGACACAGATGGCG GTGGAAGTGGCGGCTCCTTCACATGGCCGACACCGAAATGGAGTCTGAAGGCGGATTTGCAGGCACTTTCAGCTGCCGCCATATCAAGGCCTATCTTTGA TGGACTGCCTAAGCCGCTGAGTGGGTGGCGAAACAAATCAGCAGTAGACTAA
AA sequence Show only first row Show all	>Lus10017399 pacid=23140189 polypeptide=Lus10017399 locus=Lus10017399.g ID=Lus10017399.BGIv1.0 annot-version=v1.0 MACFKDDHHASFCRMLGLVADVKKRNGLITDHQMFALKTLKIPLPGRHPPSPCLSNGSESAGGSNCERTPNPLDSFQSLRPKSSSGHKVSPAMSSLQGFY GLTPADRRQSLNLSPDSNPPVTHHRKSRSYVNVFQVEKDGTDSDSIVRRRQKSEVDFPNMLMREENSNGGKVSLTGKGLALRPKSANRSGLILDPDSAAA SVVPNTGDPDAEADPISAVRKSSSASSLNDTDGGGSGGSFTWPTPKWSLKADLQALSAAAISRPIFDGLPKPLSGWRNKSAVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	0	1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	2.4	0.9132
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	2.4	0.9164
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	2.6	0.9059
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	3.2	0.9023
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	3.5	0.9210
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	4.2	0.9066
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	5.0	0.9107
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	5.3	0.9125
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	6.0	0.8957
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	6.2	0.8885

Compare expression of checked genes

Lus10017399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.