Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 354 / 4e-111 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 349 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 332 / 5e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 331 / 2e-102 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 330 / 6e-102 EFR EF-TU receptor (.1) AT5G39390 299 / 3e-95 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 216 / 1e-60 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 210 / 2e-58 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 195 / 2e-53 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 192 / 2e-52 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010199 [exp] 805 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 423 / 2e-137 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 421 / 1e-136 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 418 / 7e-135 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 415 / 3e-134 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 419 / 4e-134 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 414 / 6e-134 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 414 / 8e-134 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 412 / 3e-133 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 470 / 7e-156 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 455 / 2e-149 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 447 / 1e-146 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 440 / 1e-145 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 438 / 3e-143 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 435 / 5e-142 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 433 / 2e-141 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 427 / 8e-139 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 424 / 5e-138 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 422 / 5e-137 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017400 pacid=23140271 polypeptide=Lus10017400 locus=Lus10017400.g ID=Lus10017400.BGIv1.0 annot-version=v1.0 ATGGGGAACTCGTTTCAAGGCTCGGTTCCTTCGTCCCTAAGGGCACTCAGAGGGTTAGTAGTTCTGGACCTTTCGCGCAACAACTTGTCTGGAGAAATAC CGGACTTTCTCGAGGAGTTTACTTCATTGGTGAAACTCAACTTGTCGTACAACAACCTCGAAGGCTCCCTGTTAACGGAGGGAATCTCGGGGAATGCTAC AGCAACAACGGTTATGGGGAACAGTGCGCTCTGTGGCGGAATGCCTGAGTTTGGATTGCCTAAATATCGCGTAGAAAGTTCCAAGAAAGGCGGTATGAGT ACCATTGTGAAGATTGTAATCTCGGTTGTATGTGGCCTCCTCGGTCTGACTTTTCTTCTTTCGTTCATCTACTTCGGCTTCCTGAGGAAGAAAGTCATAG ACCCTGAAAAAGCTTCGAGCTTTACTAGGAATGCTCTTCTGGAGGCGACGTATCATCATCGGCTTAAAGCCACAGACGGTTTTTCGTCTGCTCATTTACT CGGGGTAGGCAGCTTCGGCTCTGTATACCGAGGGCTCATAGCCATAGATGATGTCAGCAGCACAAAGATGTTTGCTGTCAAGGTGCTGAACCTTCAAAAT TCCCGAGCTTCCAAGAGCTTCGTAGCCGAATGTGAGGTGCTGAAGAACATCAGACACCGGAATCTTGTCAAGTTACTGACGGTATGTTCAGGAATCGACT ACCAGGACAACGATTTCAAGGCCCTGGTGTATGATTTTATGGTTAACGGGAGCTTAGAGGAGTGGCTTCATCCCCAAGTTAACCCTGAAGAAGAAGAAGC TTCAAGAACAAGGAAGCTGACTCTAACTCTTCTCCAGAGGTTGAACATAGCCATCGACATCAGCACTGGTTTGGATAATCTTCATAACAACAGTGGAATA CCGGTAGAGCATTGTGACCTCAAGCCTAGTAATATCCTTCACGATGTCAATATGGTCGGACATATAGGCGATTTCGGCTTGGCGAAGTTCCTTCCGGAAG CAGCACCAGCAGCAAACTCTTCGCTTAGTGTGAGAGGAACAGTCGGCTATAGCGCCCCGGAGTATGGAATGGGAAGTGAGGTTTCGAGAAGTGGTGATGT GTACAGCTACGGCATTCTGTTACTGGAGATGTTTACAGGGAGAAGGCCTACCAACGAAACGTTCAGAAACAGTTTGAATCTGCATAACTTTGCCGCGGAA GGCTTGCCGGATAAAGCAGCAGATATTCTGGATCCGGTTTTGCTGCCGGAGACGCAAGAAAGCAACAGATCCATGAACAACCAAGGAAGGATGCCAGATC AGATAGTACGAGTAGGAGTTGATTGTTCCAATGAAATTCCAAGAGAAAGAATGAGCATCAGTGATGCTTCAGCTAAGCTAACAGCAGCCAGAGATAGACT TGTCAGCAGAACGTACGAAAACGAGCAGAATCAGAATCGTCAGCTTCAAATTGATACAAACTTGAAATCAAGAGAGATTATACAGAACAACTTTCATACA CAGCTTCTCAGTCAAGTAGAGCAGGGCTTTGTTCACTGTAACTTGTTATATAGAATTGATTATAGACAATCTCAATCGACACCGATGTTGTGTTCTGTCT CCCGGTCTCATCTGTAA
AA sequence Show only first row Show all	>Lus10017400 pacid=23140271 polypeptide=Lus10017400 locus=Lus10017400.g ID=Lus10017400.BGIv1.0 annot-version=v1.0 MGNSFQGSVPSSLRALRGLVVLDLSRNNLSGEIPDFLEEFTSLVKLNLSYNNLEGSLLTEGISGNATATTVMGNSALCGGMPEFGLPKYRVESSKKGGMS TIVKIVISVVCGLLGLTFLLSFIYFGFLRKKVIDPEKASSFTRNALLEATYHHRLKATDGFSSAHLLGVGSFGSVYRGLIAIDDVSSTKMFAVKVLNLQN SRASKSFVAECEVLKNIRHRNLVKLLTVCSGIDYQDNDFKALVYDFMVNGSLEEWLHPQVNPEEEEASRTRKLTLTLLQRLNIAIDISTGLDNLHNNSGI PVEHCDLKPSNILHDVNMVGHIGDFGLAKFLPEAAPAANSSLSVRGTVGYSAPEYGMGSEVSRSGDVYSYGILLLEMFTGRRPTNETFRNSLNLHNFAAE GLPDKAADILDPVLLPETQESNRSMNNQGRMPDQIVRVGVDCSNEIPRERMSISDASAKLTAARDRLVSRTYENEQNQNRQLQIDTNLKSREIIQNNFHT QLLSQVEQGFVHCNLLYRIDYRQSQSTPMLCSVSRSHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	0	1
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	1.0	0.9349
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	2.4	0.9218
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10000807 [exp]	3.5	0.8973
					Lus10033476 [exp]	5.7	0.8835
AT5G46090			Protein of unknown function (D...		Lus10015396 [exp]	6.9	0.8807
AT5G58610			PHD finger transcription facto...		Lus10018681 [exp]	8.0	0.8524
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	8.1	0.8478
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	8.2	0.8508
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	8.8	0.8437
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	9.7	0.8503

Compare expression of checked genes

Lus10017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.