Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23120 527 / 0 HCF136 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010200 [exp] 708 / 0 AT5G23120 564 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071300 [exp] 550 / 0 AT5G23120 565 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1) Potri.005G092950 [exp] 61 / 9e-12 AT5G23120 87 / 9e-22 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017401 pacid=23140198 polypeptide=Lus10017401 locus=Lus10017401.g ID=Lus10017401.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCCTTACTTCCCCCTTCACCACCACAAACTCCTCTCTTCCTATCAGACCCAATTCCCAAACTACCCAGCCTTCTCACCGTTGCCAGCTGC TCACTCCCAGAGCCTCCCTCAACGAATCCCACCACAACAAAATCCAGCTGAGCCGGCGCCAATTCATTTCCCAATCCGCCGCCGTTGTAGCTGCTCCTCT CGCTCTCTCCGATCGGATTCCGGCTGCATCCGCCGAGGAAGCGCTTTCGCAGTGGGAAAGCGTTTATCTTCCTATCGACCCTGGTGTTGTCCTCCTCGAC ATTGCATTTGTCCCCGATGACCCTAAACACGGTTTTGTATTGGGAACCAGGCAGACACTGCTGGAGACGAAAGACGGGGGAGGGAGTTGGTTCCCACGAT CGATAGCCTCAGCTGAGGAAGAGGACTTCAATTACAGGTTTAATTCGATAAGTTTCAAAGGCAAAGAAGGATGGATTATTGGGAAGCCTGCGATTTTGTT GTATACTGCTGATGCTGGGGATACCTGGCAGAGGATACCACTGAGTGCTCAGCTCCCCGGAGACATGGTGGGGGTTATTTTGGTGTACATTAAAGCAACT GCAGACAAAAGTGCTGAGATGGTGACTGATGAAGGTGCTATCTATATTACTTCGAATAAGGGATATAACTGGAAGGCTGCTGTTCAGGAGACTGTTTCAG CTACGCTCAACAGAACAGTTTCTAGTGGTATTAGCGGTGCAAGTTACTATACTGGTACCTTCAATACTGTTAATCGTTCTCCAGAAGGAAGGTATGTTGC TGTCTCGAGCCGTGGTAACTTCTATATGACATGGGAGCCTGGCCAGGCATTCTGGCAGCCGCATAATCGAGCGGTCGCAAGAAGGATTCAGAACATGGGA TGGAGAGCTGATGGGGGTCTGTGGCTTCTTGTCCGCGGAGGGGGGCTTTATCTCAGCAAGGGAACTGGAATAACAGAGGATTTTGAAGAAGTCCCTGTGC AAAGTCGAGGTTTTGGCATTCTTGATGTTGGCTACCGCTCTCAGGAAGAGGCTTGGGCAGCAGGAGGCAGTGGGGTTTTGTTGAGAACCACAAATGGAGG CAAGTCATGGATTCGAGACAAAGCAGCTGACAATATTGCTGCAAATCTCTACTCAGTGAAGTGA
AA sequence Show only first row Show all	>Lus10017401 pacid=23140198 polypeptide=Lus10017401 locus=Lus10017401.g ID=Lus10017401.BGIv1.0 annot-version=v1.0 MAASLTSPFTTTNSSLPIRPNSQTTQPSHRCQLLTPRASLNESHHNKIQLSRRQFISQSAAVVAAPLALSDRIPAASAEEALSQWESVYLPIDPGVVLLD IAFVPDDPKHGFVLGTRQTLLETKDGGGSWFPRSIASAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGDTWQRIPLSAQLPGDMVGVILVYIKAT ADKSAEMVTDEGAIYITSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPEGRYVAVSSRGNFYMTWEPGQAFWQPHNRAVARRIQNMG WRADGGLWLLVRGGGLYLSKGTGITEDFEEVPVQSRGFGILDVGYRSQEEAWAAGGSGVLLRTTNGGKSWIRDKAADNIAANLYSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	0	1
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	1.0	0.9537
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	4.0	0.9494
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	4.6	0.9039
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	4.9	0.9231
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	4.9	0.9432
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	6.0	0.9396
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	7.9	0.9301
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	8.5	0.9158
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10006189 [exp]	8.7	0.9070
AT3G25805			unknown protein		Lus10022435 [exp]	8.8	0.9334

Compare expression of checked genes

Lus10017401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.