Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48930 742 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G64390 573 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 559 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 521 / 1e-180 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT2G44540 458 / 1e-156 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44550 454 / 4e-155 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44570 440 / 1e-149 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 432 / 2e-146 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT4G23560 389 / 2e-129 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G02290 385 / 1e-127 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010201 [exp] 1108 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10001833 [exp] 578 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 578 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 575 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 503 / 2e-173 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10035316 [exp] 486 / 4e-167 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10033957 [exp] 481 / 2e-165 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10008208 [exp] 401 / 4e-134 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10017525 [exp] 390 / 9e-130 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071200 [exp] 878 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.003G139600 [exp] 581 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G092200 [exp] 578 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 541 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 523 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.002G202400 [exp] 389 / 5e-129 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G098800 [exp] 387 / 1e-128 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.001G083200 [exp] 385 / 4e-128 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.014G126900 [exp] 385 / 6e-128 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.006G219700 [exp] 383 / 2e-127 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0203 [flax] [poplar] CBD PF09478 [flax] [poplar] CBM49 Carbohydrate binding domain CBM49 CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10017402 pacid=23140266 polypeptide=Lus10017402 locus=Lus10017402.g ID=Lus10017402.BGIv1.0 annot-version=v1.0 ATGAAGAACAAGTTGAACCTTAGTCCTTGTGCAGCTGCTGCAATATGCAACTTGCTTCTATGCAGCCACATGGTACTCGGCCTAGCGCAAGGCCTCAACT ATGCCGATGCACTCGACAAGACGTTTCTGTTCCTCGAAGCTCAGAGGTCCGGGAAACTCCCCCTCACGGATCAGAGGGTCAAATGGAGGGGTGATTCCGG CCTCCGCGATGGACATCTCCAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCAGGGGACCATGTCAAGTTTGGTCTGCCAATGGCATTCAGTGTCACA ATGATGGCTTGGGGAGCCGTCGATTTCGACCAAGATATCATATCGACTGACCAGATGGGGAACACTTTACGAGCCATTCGATGGGAAACCGACTACTTCC TCAAGGCACATACTCAGCCTAATGTTCTCTGGGCTCAAGTCGGAGATGGCGATTCCGATCATTACTGTTGGGAGCGAGCGGAGGACATGACGACTCCCCG AACAAGCTACAAGCTCGATCAGAACAATCCCGGATCCGACCTTGCTGGAGAAACCGCTGCCGCCTTAGCAGCATCTGCCTTGGCTTTCAAGCCGTATAAT TCTTCATACTCTAATCTCCTTTTGGCCCACGCCAAGCAGCTATTCTCCTTCGCCGATAGGTTTCGTGGTTTATATGACGACAGCATCCAGAACGCCAAAC AATTCTACACTTCCTCTGGCTACTCGGATGAGTTACTGTGGGCTTCCACGTGGCTTTATCGCGCCACGGGGGACGAATACTACCTCAAGTATGCAGTGGA CAATGCTGTGTACATGGGCGGAACCGGTTGGGCTGTTAAGGAATTCTCTTGGGATAACAAATATGCCGGTGTTCAGATCCTTCTTTCTAAGATACTTCTA GAAGGACGAAGCGGGCAGTACACGCAGACCCTGAAGCAATACCAAGCGAAAGCGGGTTACTTCGCGTGCGCCTGCGTACAGAAGAACGAGGGCTACAACA TCCACAAGACTCCGGGCGGGCTAATGTACGTAAGAGAATGGAACAACATGCAGTATGTCTCGGCTGCTGCATTCCTCACTGCAGTCTACTCGCAGTATCT AACCTCTTCGAATGCCAAGCTTACTTGCCCAAGGGGGCAGCTAGTTGAGCCCCGGGAGCTTCTCGACTTCGCCAAGTCACAGGCTGATTACATCCTGGGA AAGAACCCCAGGGCCATGAGCTACATGGTTGGATACGGGCAACAGTATCCGATTCACGTCCATCACAGGGATGCGAATCCGAATGTAGTTCACGGTGCTC TAGTGGGAGGACCTGATCAGAAAGACAACTTCTCCGATCAGCGTGCTAACTACGAGCAGACTGAGCCTACGCTTACTGCCAGCGCTCCCCTTATTGGTCT CTTCTCCAAGCTGCAAAGTGCATCAGGAAATCGAGGCTACCAACCTAAAGCATCACCTGTTACACATTACACGAAACCGACTCCAGCACCGAAAACAGTT ACAGGAAGCCATGTTCCACTTGCATTCATGCATTCAATAACCCAATCATGGACGGTTGGAACCATGACATATTACAGACACAAGGTGACAATCAAAAACA CGTCTCTAAAGCCGATCACTAACATCAAATTGGTGGCACAAAACCTATTAGGGCCTATTTGGGGTCTTACACCAGCACCGGAAAAGGACACATATGTGCT GCCTACATGGGTAAAGGTGCTGCAACCCGGCTACGAGGTTAACTTCGTGTACGTGCAGGGTGGTCCACAAGCCAAGTTCAGCGTTCTAAGCTACGAATAA
AA sequence Show only first row Show all	>Lus10017402 pacid=23140266 polypeptide=Lus10017402 locus=Lus10017402.g ID=Lus10017402.BGIv1.0 annot-version=v1.0 MKNKLNLSPCAAAAICNLLLCSHMVLGLAQGLNYADALDKTFLFLEAQRSGKLPLTDQRVKWRGDSGLRDGHLQGVDLVGGYYDAGDHVKFGLPMAFSVT MMAWGAVDFDQDIISTDQMGNTLRAIRWETDYFLKAHTQPNVLWAQVGDGDSDHYCWERAEDMTTPRTSYKLDQNNPGSDLAGETAAALAASALAFKPYN SSYSNLLLAHAKQLFSFADRFRGLYDDSIQNAKQFYTSSGYSDELLWASTWLYRATGDEYYLKYAVDNAVYMGGTGWAVKEFSWDNKYAGVQILLSKILL EGRSGQYTQTLKQYQAKAGYFACACVQKNEGYNIHKTPGGLMYVREWNNMQYVSAAAFLTAVYSQYLTSSNAKLTCPRGQLVEPRELLDFAKSQADYILG KNPRAMSYMVGYGQQYPIHVHHRDANPNVVHGALVGGPDQKDNFSDQRANYEQTEPTLTASAPLIGLFSKLQSASGNRGYQPKASPVTHYTKPTPAPKTV TGSHVPLAFMHSITQSWTVGTMTYYRHKVTIKNTSLKPITNIKLVAQNLLGPIWGLTPAPEKDTYVLPTWVKVLQPGYEVNFVYVQGGPQAKFSVLSYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	0	1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	1.4	0.9628
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	1.4	0.9572
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	2.0	0.9478
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	2.4	0.9527
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10004315 [exp]	4.7	0.8747
					Lus10013951 [exp]	4.8	0.7550
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	4.9	0.9414
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	5.5	0.9447
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	5.9	0.9356
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	6.7	0.8918

Compare expression of checked genes

Lus10017402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.