Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48920 212 / 1e-58 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT3G18610 200 / 8e-54 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT5G50250 88 / 1e-18 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 86 / 1e-17 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G55340 80 / 7e-15 PHIP1 phragmoplastin interacting protein 1 (.1) AT1G45100 79 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G41690 77 / 6e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G36960 75 / 8e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 71 / 7e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G03480 71 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010202 [exp] 416 / 3e-124 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10003287 [exp] 83 / 9e-16 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10030327 [exp] 82 / 2e-15 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10023191 [exp] 78 / 3e-15 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 77 / 7e-15 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10009360 [exp] 74 / 3e-13 AT4G36960 529 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023723 [exp] 72 / 7e-13 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019341 [exp] 71 / 3e-12 AT4G36960 471 / 7e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041952 [exp] 70 / 4e-12 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093100 [exp] 271 / 2e-77 AT1G48920 229 / 9e-67 PARALLEL 1, nucleolin like 1 (.1) Potri.007G071100 [exp] 256 / 2e-73 AT1G48920 243 / 1e-72 PARALLEL 1, nucleolin like 1 (.1) Potri.015G086500 [exp] 91 / 4e-19 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 89 / 4e-19 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G090200 [exp] 83 / 1e-16 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.010G209701 [exp] 80 / 3e-15 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.016G090700 [exp] 69 / 3e-12 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G149600 [exp] 69 / 2e-11 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.001G196500 [exp] 67 / 4e-11 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 62 / 8e-11 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017403 pacid=23140208 polypeptide=Lus10017403 locus=Lus10017403.g ID=Lus10017403.BGIv1.0 annot-version=v1.0 ATGGTTGATGCTGCTGCTGCCACTGCTGTAGTTGCCACCAAGTCCACTAAGAAAGGAGCTAAGAGGCAAGCTGAAGAGCCTCTGGAGAAGGTTATGAGTA GTAAGAAGCAGAAGAAGGATCTTGTTGTGCCTCAAGTTGTTGAGAAGGAGAAATCTAAAGTGAAGGCGCAGAAGAAGATGAAGAAAGTGGATTCCAGTAG TTCGGATGAAACTTCCTCTGAGGAAGAAGAAAAGGTTGCGAAAAAAGTTACTGCTGCAAAGCTTCCTGTCCAGGAATCAAGCAGTGATGAGTCCTCTTCA TCCGATGATGAGCCTGCTCCTAAGGCTGCCCTTCCTAAGAAAGGGCAGGTAGCTGCCACAAAAGCAAAGCCGGCTGTAAGTAGTAGTAGTGATTCTTCCG AGGATGATTCTGATTCTGATTCTGACAAGAAGAAGTCATCCAAGCCTGCTATAAAAAAGGCAGCTCCAGCATCTTCATCCGACTCGTCAGATGACAGTGA TGATGACTCCTCTGATGAGGATGAGAAGGTTACTGCTGTGCCGAAAAAAGCGGCTGCCCCTGCTGCTCAAAAGAAATCTGATTCCAGTGACAGCTCCGAG TCTGAGGATGAGAGTGATTCTGATGAGGAGCCTGCCCCTAAAGCTGCCGTTCCTAAGAAAGAGCAAGTAAAAAAATCAAAGCCAGCTGCAAGCAGTAGTA GTGATTCTTCAGATGATGAATCTGATTCTGACGAGGAGCCTTCTGCTAAACCAGCTGCTCCTAAGGTTGTTCCAGCAGCTACCAATGGCTCAAAGAAGAA ACATGACAGCTCTGACGACAGCTCTGACGACAGCTCTGATGATGACTCTGATTCAGATGCAATGGACGTGGATGAGAAGAAGCCAACCAAGCCTCCTCCT CCCGCCAAGAAAGCAGCATCTTCATCTGGCTCATCAGATGACAGTGATGATGACTCCTCTGACGAGGATGAGAAGCCTGCTCCTCCTGCCAAGAAGGCAG CATCGTCATCTGACTCATCAGATGACAATGATGATGACTCCTCTGATGAGGATGAGAAGACTCCTGCTGTGCCAAAGAAGGCTGATGCCCCTGCTTCCCA AAAGAAATCTGGATCCAGTGATAGCTCAGAGTCTGAGAGCGATTCTGACAAGGATAAGGCAACTTCTTCCCCTTTCCCGGTTGTAGCCAAAACTGCTGCT GGTTCAAAATCAAAACCGGAAGCAATGGATGAGGATGACAGTGATGATGATAGTTCTGATGAAAGTGAAGATGAGCCTGTTTCTAAAAAGGTGACTAAGG CAACTACAAAGCAAGAAAGCAGCAGTGAAGATGAAAGTTCTGATGATGAAAGTGAAGATGAAAAACCTGCAAAGACCCCGGTGCAAAAGAATGTTGAACC GACTAATGCAGTGAAGGAGCCCAAAACACCCACTCCCATTAATGAGTCTACTGAATCAAACACCCTGTTTGTTGGCAACCTTTCTTTTGAAGTCGAAAAA TCTGATATTGAAAATTTCTTCAAGGATTGTGGAGAGCTTGTCGATATTCGTTTTGCTATGGATGCAGAGCAAAATTTCAAGGGATTTGGTCACGTTGAAT TTGCTACTGTAGAAGAAGCAAAGAAGGGTCTTGAGTTGGATGGCCAGTCTTTAAATGGCAGAAGGATTAGACTTGACCTTGCTCGTCCAAGGGGTGAAAG ATCCCAAACTCCATTTAGCGGTAAGGACAACCCTTCATTCCAGAAGGGTGGAAGAGGTCAGGGTCAGAAGGTGTTCGTGAGGGGATTCAACACCGCACTT GGTGAGGATGAGATTAAGGGCTCCCTAACCGAGCATTTCAGCTCTTGTGGTGAAGTTTCATGGGTCTCTCTTCCAGTAGATCAAGAAACTGGGGCCTTCA GAGGAATGGCCTTTGTTGAGTTCTCCAACGCTTCTGCCGTTAACAAAGCTTTGGAACTCGACGGTAGCGATCTTGGCGGCGAATATTTGACCGTCCAGGA GCCAAGGCCTAGGCCTGAGCGCGATGGAAGCGGCGGAGGTAGAGGAGGAGGATTCGGAAGTGGTGGTAGAGGTTTCGGAAGCGGTGGAGGTAGAGGCAGA GGATTTGGTGGCCGAGGTGGTGGTCGGGACTTTGGTGGTAGAAGCGGCGGTAGAGATGGTGGTGGCCGTTTTGGAGGTAGAGGTAGAGGGGGAAGAGATG GCGGCAGCAGAGGCCGTGGAATGCCTAGTGCTTCAGGCAAGAGGCAAGCTGAGGAAGCCTTGGAGAAGGTTGTGAATGCTAAGAAACAGAAGAAGGACGT TGTTAAGCAACAGGTCGTTGAGAAGGAGAAATCCAAAGTGAAGGCCCAGAAGAAGAAGAAAGAGGAATCCAGCTCGGATGATTCTTCTGACGAGGAAGAA GTAAAGGTTACAAAAAAAGTCACTGCTGCAAAGCCTGCTGTCGCTGACTCTAGCAGTGATGATTCCTCTTCATCTGATGATGAACCCGCCCGTAAGGCTA AAAATGGCACTGCTGTGGCTGCCACTAAGAAATCAAAACCTGCTAAGAGCAGTAGTAGTGATTCTTCAGCGGACGACTCTGATTCTGACGAGGAGCCTGC TGCCAAACCAGTTGCTGCTAAGGTTGTTCCAGCAGCTACAAATGGCTCAAAGAAGAAAGAGGAGAGCTCAGATGACAGCTCAGATGACTCTGATTCAGAT GTAATGGATGTGGATGAGAAGAAGCCATCCAAGCCTGCTGCTCCTGCCAAGAAGGCAGCATCTTCATCATCTGACTCGTCAGATGACAGTGACGAGGACT CCTCTGATGAGGATGACAAGAAGAAGGTATCCAAGCCTGCTGCTCCCGCCAAGAAGGCAGCTTCCTCATCATCAGATGGCAGTGATGATGACTCCTCTGA CGAGGATGAGAAGACTACTTCTGTGACAAAGAAGGCTGCTGTCCCTGCTGTGGCAAAGAAAGCGGATTCCAGCTCTGACTCGGATGAGAGTGATTCTGAT GAGGAGAAGCCTGTTGTAGCCAAAGCTCCTGCCGCTAAGGATGAGGATGACAGTGATGATGACAGTTCTGATGAAAGTGAAGATGAGCCTGTTACTGAAA AGGCGACCAAGGCAACTACAAAGAAAGAAAGCAGCAGTGAAGATGAAAGTTCTGATGAAGAAAGTGAAGATGAGAAACCTGCAAAGACCCCAGCGAAAAA GGCTGATACGACCAGTGCAGTGAAGGAGCCTAAAACTCCCACCACCAACGACTCTACTGAATCCAGCACCCTGTTTGTTGGCAACTTGCCTTTTGATGTT GAAAAATCTGACATTGAAAATTTCTTCAAGGATTGTGGACAGGTTCTCGATGTCCGTTTCGCTATGGATGCTGAGCAAAATTTCAAGGGATTTGGGCACG TTGAATTTGCCTCTGTAGAAGAGGCTAAAAAGGCTCTTGAATTGAATGGTGAGTCTTTGAACGGCAGAGGACTTAGACTTGACCTTGCTCGTCCTAGGGG TGAGAGGACCCAGACTCCATTTAGCGGAGGTAAACCTCAGGCTCAGAAGATCTTTGTTAGGGGATTTGACACCTCCCTGGGTGAAGATGAGATTAAGGGC TCCCTATCCGAGCACTTCGGCTCATGTGGACAAGTTAACCATATCGCCCTACCAAAAGATTATGAGACAGGAACCTTCAAAGGAATGGCCTATGTTGAGT TTGCGGACACTTCATCCATAAGCAAAGCTTTGGAGCTTGATGGAAGTGAGCTGGCGGGAGAGTATTTGACTGTTCAGGAAGCAAGGCCTAGGCCGGATCG TGATGCAAGTGGCGGTGGAGGTAGAGGATTCGGAAGCGGTGGTGGTGGTAGGGGTTTTGGGAGCGGCGGTGGTGGTAGAGGCGGCAGGGGCAGAGGTGGA GGCAGGGACTTTGGCGGTAGAGGCGGTAGAGATAGTGGCGGCCGTTTCGGAGGTCGTGGTGGCGGTAGAGGCGGAGGCGGAAGAGGTTTCGGTGGCAGAG GCCGTGGAACACCTCAATCTGCAGGTATTAGGAAGACCTTCGATGATTAG
AA sequence Show only first row Show all	>Lus10017403 pacid=23140208 polypeptide=Lus10017403 locus=Lus10017403.g ID=Lus10017403.BGIv1.0 annot-version=v1.0 MVDAAAATAVVATKSTKKGAKRQAEEPLEKVMSSKKQKKDLVVPQVVEKEKSKVKAQKKMKKVDSSSSDETSSEEEEKVAKKVTAAKLPVQESSSDESSS SDDEPAPKAALPKKGQVAATKAKPAVSSSSDSSEDDSDSDSDKKKSSKPAIKKAAPASSSDSSDDSDDDSSDEDEKVTAVPKKAAAPAAQKKSDSSDSSE SEDESDSDEEPAPKAAVPKKEQVKKSKPAASSSSDSSDDESDSDEEPSAKPAAPKVVPAATNGSKKKHDSSDDSSDDSSDDDSDSDAMDVDEKKPTKPPP PAKKAASSSGSSDDSDDDSSDEDEKPAPPAKKAASSSDSSDDNDDDSSDEDEKTPAVPKKADAPASQKKSGSSDSSESESDSDKDKATSSPFPVVAKTAA GSKSKPEAMDEDDSDDDSSDESEDEPVSKKVTKATTKQESSSEDESSDDESEDEKPAKTPVQKNVEPTNAVKEPKTPTPINESTESNTLFVGNLSFEVEK SDIENFFKDCGELVDIRFAMDAEQNFKGFGHVEFATVEEAKKGLELDGQSLNGRRIRLDLARPRGERSQTPFSGKDNPSFQKGGRGQGQKVFVRGFNTAL GEDEIKGSLTEHFSSCGEVSWVSLPVDQETGAFRGMAFVEFSNASAVNKALELDGSDLGGEYLTVQEPRPRPERDGSGGGRGGGFGSGGRGFGSGGGRGR GFGGRGGGRDFGGRSGGRDGGGRFGGRGRGGRDGGSRGRGMPSASGKRQAEEALEKVVNAKKQKKDVVKQQVVEKEKSKVKAQKKKKEESSSDDSSDEEE VKVTKKVTAAKPAVADSSSDDSSSSDDEPARKAKNGTAVAATKKSKPAKSSSSDSSADDSDSDEEPAAKPVAAKVVPAATNGSKKKEESSDDSSDDSDSD VMDVDEKKPSKPAAPAKKAASSSSDSSDDSDEDSSDEDDKKKVSKPAAPAKKAASSSSDGSDDDSSDEDEKTTSVTKKAAVPAVAKKADSSSDSDESDSD EEKPVVAKAPAAKDEDDSDDDSSDESEDEPVTEKATKATTKKESSSEDESSDEESEDEKPAKTPAKKADTTSAVKEPKTPTTNDSTESSTLFVGNLPFDV EKSDIENFFKDCGQVLDVRFAMDAEQNFKGFGHVEFASVEEAKKALELNGESLNGRGLRLDLARPRGERTQTPFSGGKPQAQKIFVRGFDTSLGEDEIKG SLSEHFGSCGQVNHIALPKDYETGTFKGMAYVEFADTSSISKALELDGSELAGEYLTVQEARPRPDRDASGGGGRGFGSGGGGRGFGSGGGGRGGRGRGG GRDFGGRGGRDSGGRFGGRGGGRGGGGRGFGGRGRGTPQSAGIRKTFDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	0	1
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	1.0	0.9778
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	2.0	0.9553
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	2.4	0.9448
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	3.2	0.9478
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	3.5	0.9512
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	3.9	0.9524
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	4.6	0.9435
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	4.9	0.9385
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	4.9	0.9190
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	6.2	0.9167

Compare expression of checked genes

Lus10017403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.