Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19760 728 / 0 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 614 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 521 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 517 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 510 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 294 / 3e-95 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 282 / 2e-90 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 273 / 1e-86 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 236 / 2e-73 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 236 / 2e-73 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010206 [exp] 829 / 0 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 523 / 0 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10006878 [exp] 484 / 8e-171 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 484 / 9e-171 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017153 [exp] 483 / 2e-170 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 341 / 4e-116 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017804 [exp] 289 / 3e-93 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 286 / 8e-92 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 282 / 3e-90 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070000 [exp] 729 / 0 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G093900 [exp] 728 / 0 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 519 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 516 / 0 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 515 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 512 / 0 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.002G157500 [exp] 289 / 4e-93 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 289 / 4e-93 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G119000 [exp] 244 / 4e-76 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G028600 [exp] 231 / 8e-72 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10017407 pacid=23140197 polypeptide=Lus10017407 locus=Lus10017407.g ID=Lus10017407.BGIv1.0 annot-version=v1.0 ATGGCGGCGAGCGTGGTTCCACCGGGGCGAGGAGCCCGCAGGTCGACGGCTGACGACGAGAAGCTCGTCTTCGAGACGACGGAAGGGATCGAGCCGGTGT CCAGTTTCGAGAACATGGGAATCAATGACAAGCTGCTCCGAGGAATCTACGAGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCAGCGAGCCGTTATGCC GATAATTAAGGGCCGGGACGTCATTGCCCAGGCGCAATCCGGTACCGGAAAGACCTCCATGATTGCCCTCTCTGTTTGCCAGGTCGTCGACATTAACAGC AAAGAGGTCCAGGCATTGATATTGTCTCCAACAAGGGAACTGGCTGCACAAACAGAGAAGGTTATACTGGCAATCGGTGACCACTTGAACATTCAAGCGC ATGCATGCATTGGTGGAAAAAGTGTGGGTGAAGATATAAGGAAGCTAGAGTATGGAGTTCATGTGGTATCAGGAACACCAGGCAGAGTATGTGACATGAT CAAGAGGAGGACTTTGAGAACTAGAGCCATAAAGCTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGTTTCAAAGATCAAATATATGATGTC TACAGATATCTTCCCCCAGAGCTTCAGGTTGTGTTGATCTCTGCCACATTGCCAAACGAAATTTTGGAGATTACAAGCAAGTTCATGACAGACCCAGTGA AGATCCTAGTCAAACGTGATGAACTGACTTTGGAGGGCATCAAACAGTTTTTTGTTGCTGTGGAAAAGGAAGACTGGAAATTCGATACTCTTTGCGACCT TTATGATACACTTACCGTCACTCAAGCTGTTATATTCTGCAATACAAAACGGAAGGTTGATTGGTTAACTGAGAAGATGCGGTCCAGCAACTTCACAGTC TCAGCAATGCATGGTGACATGCCTCAGAAGGAAAGAGACGCAATTATGAAAGAGTTCAGGGATGGTACTACACGTGTTCTGATCACTACAGATGTTTGGG CTCGCGGGCTAGACGTTCAGCAGGCAAGTTGTTTCTCTGTGTCTCTTGTTATAAACTATGACCTTCCAAACAACCGTGAGCTGTACATTCATCGAATTGG TCGATCAGGACGTTTTGGCCGCAAGGGTGTGGCCATCAATTTCGTGAAATCTGATGACATCAGGATTCTGCGAGACATTGAGCAGTACTACAGTACTCAG ATTGATGAAATGCCAATGAATGTTGCTGACCTGATATAG
AA sequence Show only first row Show all	>Lus10017407 pacid=23140197 polypeptide=Lus10017407 locus=Lus10017407.g ID=Lus10017407.BGIv1.0 annot-version=v1.0 MAASVVPPGRGARRSTADDEKLVFETTEGIEPVSSFENMGINDKLLRGIYEYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALSVCQVVDINS KEVQALILSPTRELAAQTEKVILAIGDHLNIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDV YRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTEKMRSSNFTV SAMHGDMPQKERDAIMKEFRDGTTRVLITTDVWARGLDVQQASCFSVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ IDEMPMNVADLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	0	1
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	1.0	0.8794
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	13.2	0.8331
AT2G03640			Nuclear transport factor 2 (NT...		Lus10026668 [exp]	13.3	0.7582
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	14.1	0.8004
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	17.7	0.7531
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10037000 [exp]	21.3	0.7331
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	24.2	0.7985
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	25.1	0.7942
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	27.0	0.8225
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	27.9	0.7914

Compare expression of checked genes

Lus10017407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.