Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13530 1788 / 0 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 1631 / 0 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT1G50200 1492 / 0 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT5G22800 449 / 7e-135 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT1G54960 234 / 4e-65 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 235 / 6e-65 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 234 / 1e-64 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 207 / 7e-56 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT4G08500 206 / 9e-56 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT5G66850 206 / 5e-55 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010209 [exp] 2240 / 0 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10010210 [exp] 1831 / 0 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2) Lus10000135 [exp] 454 / 2e-146 AT3G13530 434 / 2e-143 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10022640 [exp] 479 / 1e-145 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10003337 [exp] 415 / 3e-122 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10034060 [exp] 239 / 1e-66 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 239 / 2e-66 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 233 / 1e-64 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 221 / 4e-60 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070100 [exp] 1941 / 0 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094200 [exp] 1903 / 0 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094300 [exp] 1639 / 0 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2) Potri.009G141300 [exp] 472 / 1e-142 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.007G070250 [exp] 274 / 5e-83 AT1G50200 266 / 1e-82 Alanyl-tRNA synthetase (.1.2) Potri.008G149500 [exp] 239 / 5e-66 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 235 / 9e-65 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.005G033400 [exp] 232 / 6e-64 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.013G022700 [exp] 229 / 5e-63 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.001G102900 [exp] 211 / 1e-55 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF01411 [flax] [poplar] tRNA-synt_2c tRNA synthetases class II (A)
Representative CDS sequence Show only first row Show all	>Lus10017408 pacid=23140176 polypeptide=Lus10017408 locus=Lus10017408.g ID=Lus10017408.BGIv1.0 annot-version=v1.0 ATGGCAGGTGATGAACCGATGCAGGTGCCTCAATGGTCGGCGGAGAAAGTGAGGGATACTTTCATCAAGTTTTACGAATACAAGAATCACGTTAACTGGA AGTCCAGTCCAGTCGTCCCTGTGAATGATCCCACTCTCCTCTTCGCCAATGCTGGTATGAATCAGTACAAACCCATCTTCTTGGGGACAGCTGATCCTAA TACCGCACTGAGTAAGCTAACACGCGCATGTAATACTCAGAAGTGTATCCGCGCTGGAGGGAAGCATAATGATCTTGATGATGTGGGGAAGGATACGTAC CACCACACATTCTTTGAGATGTTAGGGAATTGGTCTTTCGGTGATTATTTCAAGAATGAGGCAATTGAGTGGGCTTGGGAGCTCCTGACTAAGGTTTATG GACTTCCGGCTGATCGAATTTATGCAACCTACTTTGGGGGAGATGAGAAATTGGGTCTAGCTCCAGATACTGAAGCAAAAGACATATGGCTCAGGTTTTT GCCACCTGGGCGGGTGCTACCCTTTGGTTGCAAGGACAATTTTTGGGAGATGGGTGATACTGGTCCTTGTGGTCCTTGTACCGAGATACATTATGATAGG ATTGGAAACCGTGATGCAGCTTCTTTGGTGAATAATGACGATCCTACATGCATCGAGATATGGAACCTGGTGTTTATTCAGTTCAATAGGGAAAGTGATG GCTCCTTAAAACCGCTCCCGTCTAAGCATGTTGATACTGGAATGGGATTCGAGAGACTTACTTCAGTTTTGCAAAACAAGATGAGCAATTACGACACTGA TGTCTTTATGCCCATTTTCAATGCCATTCAACAGGCAACTGGGGTACGTCCTTATACTGGAAAAGTTGGATCTGAGGACGTAGATGGAGTTGACATGGCT TACCGAGTTGTTGCTGATCACATTAGAACTCTCTCTTTTGCCATTGCTGACGGTTCTTGTCCAGGTAACGAGGGACGAGAATATGTTCTCAGGCGCATTC TCCGCCGTGCTGTTCGTTATGGAAGTGAGAAGCTAAATGCTCAAGAAGGGTTCTTTAATGGGCTGGTAAATGTTGTTGTACAAGTGATGGGTGATGTCTT CCCGGAGCTGAGAAAGAATGAACAGCACATTAAGGAAATAATCACAGCAGAGGAAACCAGTTTCGGGAGAACTTTGCTTAAGGGCATTGAGAGATTCAAA AAGGCTGCTCAGGAGGATGCATTTGTTTTGTGGGACACGTATGGCTTCCCACTAGATTTGACTCAGCTGATGGCAGAAGAAAGAAAATTGGAAGTAGATG TTGAGGGCTTTAATAAAGCGATGGATGAAGCTAGGGAAAGATCAAGAAGTGCCCAAAATAAGCAAGCTGGTGGTGCTATTGTCATGGATGCTGATTCGAC ATCTACATTACACAAGAAGGGTGTCTCTGCAACAGACGATTCTTACAAATATATCTGGTTTGAGGATCATGAGACTTCAATTAAAGCTATTTACACATGT TCCGAGTTCTTGGAAAGTGCCACTCTTGGCAATGAAGTTGGCATAGTTCTGCAATCCACCAGCTTCTATGCTGAACAAGGCGGTCAGATTTTTGACACTG GATTACTTGAAGGATCATTTGGTTCCTTTGAAGTTTGCAACGTGCAAATATTTGGAGGATTCATCCTTCATATCGGTTCTCTCACTGGAGGAACCGGAAA GTTTTCAGTTGGCGACAAAGTTGTCTGTAAGGTTGATTATGGAAGGCGCAAGCTCATTGCACCTAACCATACTTGTACTCACATGCTGAACTTTGCTCTA AGAGAAGTCCTTGGTGATCACATTGACCAGAAGGGATCTATCGTCCTCCCTGAAAAATTAAGATTCGACTTCAATCATGGCAAGCCTGTGGACGCTGAAC TTTTGAGAAAAATTGAGACAATTGTTAATGACCAAATTAAGGCCGAGTTAGGTGTATATGCAAAGGAAGTGAGCCTGGATGAAGCCAAGCGGATTAACGG TCTTCGTGCTGTTTTTGGGGAAGTGTATCCTGATCCTGTTAGAGTGGTTGCAATTGGTCATAACGTCGAAGATCTTGTGGCTAACCCAAACAATGAAAAA TGGCTGTCACTCTCAGCAGAGCTTTGTGGAGGGACACATATAACAAACACCAAGGAAGCTAAAGCATTTGCACTTCTATCTGAAGAGGGAATTGCAAAAG GTATTAGACGAATAACTGCGGTCACAACTGATAGTGCATTTAAAGCGTTGGAATTGGCGCGCTCGCTTGAGCAAGAAGTTCTTGAAGCATCCAAAGACGA TGGAAGTGCATTGGAAAAGAAAGTTGCCTCTCTGAAAAGTCGTGTGGACTCGGCAGCAATTCCCGCAGCCAAGAAAGCTGATCTCAGGGCGGAGATAACG AAGCTTCAGACAAAAGTGAGAAAGCAACAGAAGAAGATCGCTGAAGAAAATTTGCAGAAGGCCGTCCAGGTTGCAACTGAGATTGCTGAAACCGCTGCAT CAGAAGGAAAGGCATTTTGCATCACTCGAGTAGATGTCGGTTTGGATGCAACTGCAGTTCGCGAAGCTGCAATGAAAGTCCTCGAGCGAAAGGGCATATC TATCATGGTCTTCAGCACCGACGAGACCACAAACAAAGCAGTGGTCTGTGCAGGAGTTCCGGAGAAGTCAACCCAGGGGAAGCAGCTGGAGGTGTCCGAG TGGTTGACTAATGCGCTGGGGCCTCTCAAAGGACGGTGCGGAAAAGGAAAAGGCGGTCTTGCCACTGGCCAGATGCTTGGCGATGAGATTGGGAAAGGAG CATATGGTCGGGTTTATAAAGGCTTGGATTTGGAGAATGGAGACTTCGTTGCTATCAAACAAGTGTCGTTGGAGAATATTGCTCAGGAGGACCTCAATAT TATCATGAATCTGAACCATAAAAACATTGTGAAGTACCTTGGATCATTGAAGACGAAAACTCATCTTCACATAATTCTTGAGTATGTAGAGAATGGTTCC CTTGCAAACATCATCAAGCCAAATAAATTCGGGCCTTTCCCGGAGTCTTTGGTTACTGTTTACATTGCTCAGGTTTTGGAAGGTTTGGTTTATCTACATG AACAAGGTGTCATCCACCGGGATATCAAGGGTGCAAACATATTAACTACTAAGGAGGGACTTGTGAAACTTGCCGATTTTGGCGTAGCAACAAAATTGAC CGAGGCTGATGTTAATACACATTCAGTTGTTGGAACACCATACTGGATGGCCCCTGAGGTGATTGAAATGTCAGGGGTTTGTGCAGCTTCTGACATTTGG AGCGTTGGTTGTACTGTAATCGAACTTCTTACCTGTGTGCCTCCATACTATGATTTGCAGCCTATGCCAGCATTGTTTCGTATTGTTCAGGATGATCATC CTCCAATACCTGATAGTCTGTCTCCTGACATCACAGATTTCCTACGCCAATGCTTCAAGAAGGATGCTAGGCAGAGACCTGATGCAAAAACTTTGCTTTC TCATCCTTGGATACTGAACTCAAAGCGTACTTTAAACTCTTTGCGCAATACTCCTTCAATCAGGAGTATCCAGGAAGATGTTGAAAATGGAGACAATGAG ATCCCTGATGAAGATCGTTCTATTGAGAAAGCTGAAGCTGCCATCACTGACTCTGAGACTGGCTCCAAGACTGAACTGTCTGGGGAAATGACTGATGAAA TCAAGTCAGATAAGAACCAGTCTTCAGAAAATGATGAACCTGATGAATGCATTCACTCAGATCAGGTTCCAACATTAGCTCTTCATGAGAAGCCACAACT ACATCCAGATAAGGCATCTGAGCATAAGATAGTGGCTGGGAATTCTTCTCATGGCCCGGCAGATATGCGTGATCATGATGATGTACTAATGAATGGGAAT TTGGAATTTCCTGATACGAGAAGCAAAAGTGTGGATAAAAAACTTGGAGGGAAAGGTGCTGCCCTAAATGAAAGTAAATCATTTGGTTTTGTATCGAAAA GTCCAGATAATGGGTCGCAGAGGGCTGCAAAGACATCTGTGACTTTGGGTGGGAATGAGCTCAGTAGATTTAGTGACACACCAGGAGATGCTTCACTAGA CGATTTATTTCATCCTCTTGATAAAGCTCCTGCAGATAGAACAGCTGAAGCTTCTACCTCTACATCAACATCACATATGAATCAGGGTGGTACGCCTGTC TCTGATGCTGGGAAACATGACCTCGCTACTAAGTTGAGGGCCACTATTGCTCAGAAACAAATGGAGAATGATGTGGGGAAGTCCAGTGATGGAGGTGACC TCTTTCGAGTCATGATGGGTGTTTTGAAGGATGATGTAATTGATTTTGATGGTTTGGTTTTTGACGAGAAGTTGCCGGCAGAAAATCTTTTTCCTTTACA GGTTGTTGAGTTCGGTAGATTAGTTGGGTCATTAAGACCTGAGGAATCAGAAGATGTTATTTCTTCTGCCTGCCAAAAACTTGTTGGTATGTTTCATCAG CGCCCAGAGCAAAAACTTGTCTTTATCACCCAGCATGGGTTGCTTCCCCTCATGGAATTACTTGAAGTACCCAAAACCCGTGTTATATGTTCTGTCCTCC AACTGATCAATCAAATTGTGAAAGATAATACTGATTTCCAGGAAAACGCTTGTCTTGTTGGCTTGATACCTGTGGTCATGAGCTTTGCGGGACCTGATCG TCCACGGGAGGTCCGCATGGAGGCTGCTTACTTCTTACAGAAGCTTTGCCAATCAAGCTTTTTGACACTTCAAATGTTTATTGCTTGCCGTGGAATACCT GTGTTGGTCGGATTCCTGGAAGCTGATTATGCGAAGTACAGGGAAATGGTTCACTTAGCTATCGATGGCATGTGGCAGGTCTTTAAGCTTCAGAGGTCCA CCCCCAGAAATGATTTCTGTCGCATAGCTGCAAAAAATGGAATTTTGTTGAGACTTATCAACACTCTTTATAGCTTGAATGAGGCAGCTAGGCTTGCCAC TATATCTGTTGGAACTGGATTTTCATCAGATGGTTCAGCTCCCCGACCACGCTCTGGCCAACTGGATTCTAGCCATCCTGTTTTCTTACAGAATGAGACG TCATTTCCTGCAGCTGATCTGCCTGATGTCCTTAAGCTTAAGAACGGCATGATTGATCATCCATCATCAACTGATGCAATACAGTTAGAAATCAGATACT CTAATACTGATGTTGACAGACCTCAATCAAGCAACTCAGCTTTCGCGCCTGAAGCTGATAAAACTGGGAGTGCCGCTGTTAAAGACAACTCAGCTTCTGT CACTAAGGAGCGAGATAACTTGGAACGGTGGAAAGCAGATGCTTCTAGAGGTGAAACAGACAACAGGCAGCAGCGAATTTCAGTTTCCAATAATCGAATT TCTGCCGATAGGTCACCAAAATCATTAGAAAGTATGTCAAATGAGGTCTCGGGGAGAGGAAAAGAAAATGGCACTCTTGAGTCTGCACCTAGGATTTCAC ATAAAACAGTGAGTAAGAAAAGCAGCCCATTAGCCTCTAGTGATGGTGCTGCTTCCACGTCTGGTATTGCTTCCCAAACTGCTTCCGGTGTACTTTCTGG TTCCGGGGTGTTGAATGCTAGACCAGGGAGTGCAACATCATCTGGACTACTTTCCCACATGGTGTCAACAATGAACGCCGATGTTGCCAGGGAGTACCTT GAAAAGGTGGCTGACCTTCTACTTGAGTTTGCTCAAGCTGATACGACTGTCAAATCTTATATGTGCAGCCAAAGCTTGCTTAGCCGTCTCTTCCAGATGT TCAACAAAATTGAGCCCCCTATACTCCTCAAGATCCTAAAGTGCATCAATAATCTATCTTGTGATCCTAACTGCTTAGAGAATCTTCAGCGGGCAGATGC AATTAAGTTCTTGATCCCAAACCTTGAACTGAAAGATGGACCTCTAGTTGGCCAAATCCACGACGAGGTTCTTCATGCGCTCTTTAACCTGTGTAAGATA AACAAGAGGAGACAGGAACAAGCTGCTGAAAATGGAATCATACCTCACCTCATGAATTTCATCATGCAAGGATCTCGCTTGAAACAATATGCATTGCCTT TGCTATGCGACATGGCCCACGCATCGCGCAACTCCAGAGAACAACTGAGGGCTCATGGTGGATTGGATGTTTACTTGAGCCTTCTGGATGATGCATCGTG GTCTGTAACTGCATTGGATTCCATCGCTGTTTGTTTGGCTCATGACAACGACAACCGCAAAGTAGAGCAAGCCTTGCTTAAAAAAGATGCTATTAACAAA TTAGTCAAGTTTTTCCAGAGCTGTCCGGAGCAACAATTCGTTCATATCCTGGAGCCCTTCTTGAAAATCATCACGAAATCTTCACGGATAAATACTACAC TGGCTGTTACTGGTTTGACACCTTTGCTCATTGCAAGGCTGGACCATCAGGACGCAATAGCTCGTCTTAACTTGCTTAAACTAATCAAGGCGGTATACGA GCATCACCCGAGGCCGAAGCAACTGATCGTGGAGAACGACCTGCCTCAGAAACTCCAAAACTTGATCGAGGAACGAAGAGACGGTCAGAGTTCCGGTGGG CAAGTGTTGGTGAAACAAATGGCTACTTCGCTACTGAAAGCACTACATATCAACACAGTGTTGTAA
AA sequence Show only first row Show all	>Lus10017408 pacid=23140176 polypeptide=Lus10017408 locus=Lus10017408.g ID=Lus10017408.BGIv1.0 annot-version=v1.0 MAGDEPMQVPQWSAEKVRDTFIKFYEYKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTY HHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYGLPADRIYATYFGGDEKLGLAPDTEAKDIWLRFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDR IGNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPSKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFNAIQQATGVRPYTGKVGSEDVDGVDMA YRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEKLNAQEGFFNGLVNVVVQVMGDVFPELRKNEQHIKEIITAEETSFGRTLLKGIERFK KAAQEDAFVLWDTYGFPLDLTQLMAEERKLEVDVEGFNKAMDEARERSRSAQNKQAGGAIVMDADSTSTLHKKGVSATDDSYKYIWFEDHETSIKAIYTC SEFLESATLGNEVGIVLQSTSFYAEQGGQIFDTGLLEGSFGSFEVCNVQIFGGFILHIGSLTGGTGKFSVGDKVVCKVDYGRRKLIAPNHTCTHMLNFAL REVLGDHIDQKGSIVLPEKLRFDFNHGKPVDAELLRKIETIVNDQIKAELGVYAKEVSLDEAKRINGLRAVFGEVYPDPVRVVAIGHNVEDLVANPNNEK WLSLSAELCGGTHITNTKEAKAFALLSEEGIAKGIRRITAVTTDSAFKALELARSLEQEVLEASKDDGSALEKKVASLKSRVDSAAIPAAKKADLRAEIT KLQTKVRKQQKKIAEENLQKAVQVATEIAETAASEGKAFCITRVDVGLDATAVREAAMKVLERKGISIMVFSTDETTNKAVVCAGVPEKSTQGKQLEVSE WLTNALGPLKGRCGKGKGGLATGQMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGS LANIIKPNKFGPFPESLVTVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIW SVGCTVIELLTCVPPYYDLQPMPALFRIVQDDHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWILNSKRTLNSLRNTPSIRSIQEDVENGDNE IPDEDRSIEKAEAAITDSETGSKTELSGEMTDEIKSDKNQSSENDEPDECIHSDQVPTLALHEKPQLHPDKASEHKIVAGNSSHGPADMRDHDDVLMNGN LEFPDTRSKSVDKKLGGKGAALNESKSFGFVSKSPDNGSQRAAKTSVTLGGNELSRFSDTPGDASLDDLFHPLDKAPADRTAEASTSTSTSHMNQGGTPV SDAGKHDLATKLRATIAQKQMENDVGKSSDGGDLFRVMMGVLKDDVIDFDGLVFDEKLPAENLFPLQVVEFGRLVGSLRPEESEDVISSACQKLVGMFHQ RPEQKLVFITQHGLLPLMELLEVPKTRVICSVLQLINQIVKDNTDFQENACLVGLIPVVMSFAGPDRPREVRMEAAYFLQKLCQSSFLTLQMFIACRGIP VLVGFLEADYAKYREMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILLRLINTLYSLNEAARLATISVGTGFSSDGSAPRPRSGQLDSSHPVFLQNET SFPAADLPDVLKLKNGMIDHPSSTDAIQLEIRYSNTDVDRPQSSNSAFAPEADKTGSAAVKDNSASVTKERDNLERWKADASRGETDNRQQRISVSNNRI SADRSPKSLESMSNEVSGRGKENGTLESAPRISHKTVSKKSSPLASSDGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTMNADVAREYL EKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNKIEPPILLKILKCINNLSCDPNCLENLQRADAIKFLIPNLELKDGPLVGQIHDEVLHALFNLCKI NKRRQEQAAENGIIPHLMNFIMQGSRLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDASWSVTALDSIAVCLAHDNDNRKVEQALLKKDAINK LVKFFQSCPEQQFVHILEPFLKIITKSSRINTTLAVTGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPQKLQNLIEERRDGQSSGG QVLVKQMATSLLKALHINTVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	0	1
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	4.1	0.9134
					Lus10013097 [exp]	6.9	0.8873
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	10.8	0.8842
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	12.9	0.9068
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	14.7	0.8973
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	17.4	0.8734
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	18.3	0.8886
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	19.6	0.8500
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	20.6	0.8728
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	27.5	0.8830

Compare expression of checked genes

Lus10017408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.