Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27470 748 / 0 seryl-tRNA synthetase / serine--tRNA ligase (.1) AT1G11870 251 / 5e-78 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010211 [exp] 890 / 0 AT5G27470 745 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010212 [exp] 501 / 8e-178 AT5G27470 474 / 4e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010344 [exp] 248 / 3e-77 AT1G11870 786 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3) Lus10036477 [exp] 239 / 1e-73 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094400 [exp] 732 / 0 AT5G27470 731 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.007G070501 [exp] 375 / 4e-130 AT5G27470 380 / 3e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.002G100300 [exp] 262 / 5e-82 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0298 [flax] [poplar] tRNA_bind_arm PF02403 [flax] [poplar] Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017409 pacid=23140265 polypeptide=Lus10017409 locus=Lus10017409.g ID=Lus10017409.BGIv1.0 annot-version=v1.0 ATGTTGGACATTAATCTGTTCAGGGAGGATAAGGGCAACAATCCGGAAATCATCCGGGAATCTCAGCGACGCCGTTCGGCCAATGTTGATATTGTTGATG AGATCATTAAGCTTGACAAGGAATGGAGGCAGCGTCAATTTGAGTATGATAATCTGAGGAAGGATTTTAACAAGATCAACAAGCAAGTTGCCAAACTTAG GATCAGCGGTGGAGATGCAACTGAACTTATCCAGAGCACTGATGATAACAAGAAGCAAACTGCATTGAAAGAGATTGAGGTGCAGGAGGCCAAGACAGCT TTGTATGCGAAGTTGGAAACAGTTGGTAACCTTGTCCATGATTCCGTCCCTATTAGCAAAGACGAGGCAAATAATGAAGTAATCAGAGTTTGGGGGGAGA AACGTACAGACAAGAAACTCAAGAGTCACGTTGACCTAATTGAACTTCTTGGAATCGCTGATGTGAAGAAAGGGGCTGATGTAGCTGGAAGCAGAGGCTA CTACCTAAAAGGTGACGGTGTACTACTCAATCAAGCATTGATAAATTATGGACTTGGTTTCTTAAGGAAAAGAGGGTTCACTCCCCTGCAGACTCCTTTC TTCATGAGAAAGGAACCCATGGCCAAGTGTGCTCAGTTGACACAGTTTGACGACGAACTTTATAAGGTGACGGGAGAGGGGGATGATAAATATTTAATTG CTACGGCTGAACAACCACTGTGTGCGTATCACCTAGATGAGTGGATTCATCCCACTGAACTACCAACCAGATATGCTGGATACTCAACGTGTTTCCGCAA AGAAGCTGGTTCCCATGGTCGGGACACTTTAGGAATTTTCCGAGTTCATCAGTTTGAGAAACTGGAGCAGTTCTGCATCACAAGCCCAAATGACAATGCC TCGTGGGCTATGCTTGAAGAAATGATGAAGAATTCTGAAGAGTTTTACCAGACGCTGAACCTACCTTATCAAGTTATCTCCATTGTCTCGGGGGCCTTGA ATGATGCTGCTGCAAAGAAGTATGATCTCGAAGCATGGTTTCCTGGTTCAAACGCCTACAGGGAGTTGGTTTCCTGCTCGAATTGCACAGATTACCAGTC TAGAAGATTGGAAACCCGATATGGGCAGAAAAAGGGCAATGAGGCAGCAAAGCAATATGTACACATGTTGAACTCGACCTTGACTGCTACAGAAAGGACA ATCTGCTGCATACTCGAAAACTACCAGAGGGAAGATGGAGTTGAGATCCCAGAAGTTCTGAGGCCGTACATGCATGATGTAACCTTCATGCCTTTCCAAG CAGGAAAGGGAAAGAAAGCCAAGTAG
AA sequence Show only first row Show all	>Lus10017409 pacid=23140265 polypeptide=Lus10017409 locus=Lus10017409.g ID=Lus10017409.BGIv1.0 annot-version=v1.0 MLDINLFREDKGNNPEIIRESQRRRSANVDIVDEIIKLDKEWRQRQFEYDNLRKDFNKINKQVAKLRISGGDATELIQSTDDNKKQTALKEIEVQEAKTA LYAKLETVGNLVHDSVPISKDEANNEVIRVWGEKRTDKKLKSHVDLIELLGIADVKKGADVAGSRGYYLKGDGVLLNQALINYGLGFLRKRGFTPLQTPF FMRKEPMAKCAQLTQFDDELYKVTGEGDDKYLIATAEQPLCAYHLDEWIHPTELPTRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKLEQFCITSPNDNA SWAMLEEMMKNSEEFYQTLNLPYQVISIVSGALNDAAAKKYDLEAWFPGSNAYRELVSCSNCTDYQSRRLETRYGQKKGNEAAKQYVHMLNSTLTATERT ICCILENYQREDGVEIPEVLRPYMHDVTFMPFQAGKGKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	0	1
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	1.4	0.8794
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	3.7	0.8867
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	4.6	0.8284
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	5.5	0.8582
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	8.1	0.8466
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	9.0	0.8253
AT2G31410			unknown protein		Lus10031995 [exp]	9.5	0.8145
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	12.0	0.8361
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	13.3	0.8219
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	15.0	0.7883

Compare expression of checked genes

Lus10017409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.