Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19810 230 / 7e-72 Protein of unknown function (DUF177) (.1) AT5G18400 62 / 1e-10 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010214 [exp] 345 / 5e-118 AT3G19810 299 / 4e-102 Protein of unknown function (DUF177) (.1) Lus10010213 [exp] 247 / 2e-79 AT5G18400 214 / 4e-69 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170100 [exp] 254 / 3e-81 AT3G19810 285 / 2e-95 Protein of unknown function (DUF177) (.1) Potri.005G198900 [exp] 85 / 4e-18 AT5G18400 250 / 5e-83 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) Potri.002G062200 [exp] 71 / 1e-13 AT5G18400 234 / 7e-77 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0063 [flax] [poplar] PF02620 [flax] [poplar] YceD Large ribosomal RNA subunit accumulation protein YceD
Representative CDS sequence Show only first row Show all	>Lus10017411 pacid=23140168 polypeptide=Lus10017411 locus=Lus10017411.g ID=Lus10017411.BGIv1.0 annot-version=v1.0 ATGTCGCTTGTGTTCTTTGCATCTTCGGTAGCCGCCCCATCACATATACCCCTACTGAAAGTAGCAGACAATTTGACATCTTTGAACAGCTTCCAATCAT GCCACACAGTCAAATGTGAGTTTGTTCGTCGTCTTCCCAGCAAATCACCTGCGATTTCAAAGGTTATTACTACTAGAAACATGGCTAGCAGAGGCCAGCA TACTGTCACGGATGTATCTTTGAATTGGGACGACGATGATTCGGAGGAACTTGACATTGACGATGGGGAGTCGCCATGGGAAGGCGCGATTGTATACCGG AGAAACGCACACGTTCTGCATGTTGAGTACTGCACGACTCTGGAAAGACTCGGTCTAGGTCACCTCTCGACAGATGTTTCGAAATCAAGGGCTTCGATGA TGGGACTAAGGGTTACTAAAGCTGTTAAGGATTACCCACAGGGAACTCCTGTTCAGATCTCCGTTGATGTTACAAAGAAGAAGAATAGGCTGAGGCTTGA TGGGATTATCAGGACAGTGCTCACCTTAACCTGCAATAGGTGCTGTCAGCCAGCAGCTGAGAGTATCTACTCAAACTTCTCTCTTCTACTAACAGAAGAC CCCGTCGAAGAGCCAGAGGTGATCAGTTTAGATCCGAACCCTGCCGGAGCTGGCGAGGAAGACGACGAGGATGCACTGATCGATTGGGACGACAGGCTGT ATTTTCCTCCTGAAGAGAGTGAAGTCGACATATCCAAGAACATAAGAGATATGGTGCATGTGGAGATCACAATCAATGCGGAATCGAAGGTTGCGCTGGT GATTTCTGATGATCAGGTAGTGCGGATGAGCACGGTTAACGATGCGCTTAAGGAGCTCGGGAAGGAAGCTTTGCAGTGTGAAGTTCAGCTTTATACTCAG TCATCTTCATCAAGTAAGCTACCAGTGGAATCTTCTTCATTGGATTTCCTCATTTGCATCAGTAGATCACATGAATATCCTGGTGGGACTGGGTTTGATG AAATTTCTCGAGTGTTGAAGCCTGGTGGTACTATCTTTGTGTATAAGATTATGCAGGCAGTTCCTAGGGAGGCAGAAAAGGAAGCTGACGATAACAGTGC CCATTTCCAGTCTCTTGAACGCCAATTACTTTTTGCTGGCTTCTTGGATGCTAAAGGTGTTCAGCTGAGCTCTTCCACTGGTGGTCAGTCATTTCTGACG GTTAAGGCAAAGAAGGCTTCTTCCAAAATCGGGTCATCCTTTGCTCTCAAAAAGGTGACAAAAGCACCTGTAAAGCTCCAGATTGACGACGACTCAGATT TGATAGATGAAGATAGCCTTTTAACGGAAGAGGATTTCAAGAAACCTCAAATACCAGGCGAGTTGCTAAAAAACCTGATTGATTAA
AA sequence Show only first row Show all	>Lus10017411 pacid=23140168 polypeptide=Lus10017411 locus=Lus10017411.g ID=Lus10017411.BGIv1.0 annot-version=v1.0 MSLVFFASSVAAPSHIPLLKVADNLTSLNSFQSCHTVKCEFVRRLPSKSPAISKVITTRNMASRGQHTVTDVSLNWDDDDSEELDIDDGESPWEGAIVYR RNAHVLHVEYCTTLERLGLGHLSTDVSKSRASMMGLRVTKAVKDYPQGTPVQISVDVTKKKNRLRLDGIIRTVLTLTCNRCCQPAAESIYSNFSLLLTED PVEEPEVISLDPNPAGAGEEDDEDALIDWDDRLYFPPEESEVDISKNIRDMVHVEITINAESKVALVISDDQVVRMSTVNDALKELGKEALQCEVQLYTQ SSSSSKLPVESSSLDFLICISRSHEYPGGTGFDEISRVLKPGGTIFVYKIMQAVPREAEKEADDNSAHFQSLERQLLFAGFLDAKGVQLSSSTGGQSFLT VKAKKASSKIGSSFALKKVTKAPVKLQIDDDSDLIDEDSLLTEEDFKKPQIPGELLKNLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	0	1
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	10.4	0.8294
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	11.1	0.8381
AT2G43630			unknown protein		Lus10010586 [exp]	14.5	0.7829
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	25.5	0.7824
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	29.2	0.7948
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	30.0	0.7761
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	32.0	0.7618
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	36.4	0.7889
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	38.7	0.7912
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	42.0	0.7892

Compare expression of checked genes

Lus10017411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.