Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19820 216 / 2e-68 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010215 [exp] 0 / 1 AT3G19820 711 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084800 [exp] 234 / 3e-75 AT3G19820 993 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Potri.010G170000 [exp] 233 / 1e-74 AT3G19820 992 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017413 pacid=23140138 polypeptide=Lus10017413 locus=Lus10017413.g ID=Lus10017413.BGIv1.0 annot-version=v1.0 ATGTCTGATCTAGAGGTTCCTTTGGCCCAGCGCCCCAAGAGGAAGAAGATTTGGGTGGACTACTTCGTTAACTTCAGATGGATTATAGTCATCTTTGTTG TCCTCCCAATCTCTTTCACCCTCTACTTCCTCACTTACCTAGGCGACGTGTGGTCCGAGATGAAGTCGTTCAAGAAGCGTCAGAAGGAACATGACGACAA TGTCAAGAAAGTCGTCAAACGACTCAAGGAAAGAAATGCGTCAAAGGATGGTCTCGTCTGCACTGCTCGTAAGCCCTGGATTGCAGTCGGTATGCGAAAC GTTGACTATAAACGTGCACGACACTTCGAAGTCGATCTATCTGCATTCCGTAACATCCTCGACATTGACATAGAAAGAATGGGTGGGCTGACTCATCAAC GGTTATGGAATCGAGGGAAGCTCTCACATCTATGGCCTTTTTTCGGACACTGTTGTGGCATATGA
AA sequence Show only first row Show all	>Lus10017413 pacid=23140138 polypeptide=Lus10017413 locus=Lus10017413.g ID=Lus10017413.BGIv1.0 annot-version=v1.0 MSDLEVPLAQRPKRKKIWVDYFVNFRWIIVIFVVLPISFTLYFLTYLGDVWSEMKSFKKRQKEHDDNVKKVVKRLKERNASKDGLVCTARKPWIAVGMRN VDYKRARHFEVDLSAFRNILDIDIERMGGLTHQRLWNRGKLSHLWPFFGHCCGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	0	1
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	1.0	0.9564
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	2.4	0.9282
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	4.2	0.9047
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	4.2	0.9494
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	5.9	0.9182
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	8.5	0.9179
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	10.2	0.9179
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	10.5	0.9125
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	10.7	0.8922
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	11.0	0.9233

Compare expression of checked genes

Lus10017413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.