Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56230 103 / 2e-26 BTB/POZ domain-containing protein (.1) AT1G01640 92 / 1e-22 BTB/POZ domain-containing protein (.1.2) AT2G40440 66 / 3e-13 BTB/POZ domain-containing protein (.1) AT2G40450 63 / 6e-12 BTB/POZ domain-containing protein (.1) AT5G48510 58 / 4e-10 BTB/POZ domain-containing protein (.1) AT3G29740 55 / 4e-10 BTB/POZ domain-containing protein (.1) AT4G04090 54 / 9e-09 BTB/POZ domain-containing protein (.1) AT4G08455 47 / 2e-06 BTB/POZ domain-containing protein (.1) AT2G05330 45 / 1e-05 BTB/POZ domain-containing protein (.1) AT2G39760 42 / 0.0002 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010216 [exp] 78 / 1e-17 AT3G56230 132 / 3e-38 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 50 / 5e-07 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 47 / 3e-06 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 43 / 8e-05 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10008348 [exp] 43 / 9e-05 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083800 [exp] 124 / 1e-34 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 45 / 1e-05 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.001G468700 [exp] 44 / 4e-05 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 44 / 5e-05 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10017414 pacid=23140199 polypeptide=Lus10017414 locus=Lus10017414.g ID=Lus10017414.BGIv1.0 annot-version=v1.0 ATGCTCAATTTGGGTTCCATAGCTGTTGGGCCTGGATGTGATAGGCCCGGCCCAGGTTCTCTTGGCAATAGTAATATTCGGTTATTTCTCGGTTTTTCTT GCACAGCCTCAGCCACTAGCAAATCTACCGAGATGGGTCAACACCATGAAGGACAAAATGACGAATCAACCCAAAAAATCGATTTCCTCAGCAACCTCGT CGATCTGTTCCGATCACTACTTCTCACCGACGTCCACCTCAAACCTGGCGACGACTCCCCTTCCTTCCCCTCTCACAAAGCCCTTCTCGCAGCGAGATCG GAGATATTCAAGACGATGGTAGACGCGGAGTCCTGGAAGCCACCGGAGAACAACACAATCACCCTACCGGAGCTCAACCACGAGGAGCTGGAATCGTTCC TCGAATTCCTCTACACGGCCACATTACCTCCGGAAAAGCTGGAAAGGGACACATGTTCAGGTCCCTGGACACGTCCACGGCACTTTGAACGAGGGGAAGT AGGAGGGGTTCGTGGGCAGGAACCCGGGTTTGGCTGTGGAGGTCACGAGGGCTTTTTTGGAAAATGCCAAAGACTCGCTGCTGCAGAGCAAACAATTGTA ATAAGGGATTTGACTGCTCGCTATGCACTGTGGTACTACTCTTTGGTCGTCATGCATGAGTGGAATCTTTGGAATTGTGGGTTGTAA
AA sequence Show only first row Show all	>Lus10017414 pacid=23140199 polypeptide=Lus10017414 locus=Lus10017414.g ID=Lus10017414.BGIv1.0 annot-version=v1.0 MLNLGSIAVGPGCDRPGPGSLGNSNIRLFLGFSCTASATSKSTEMGQHHEGQNDESTQKIDFLSNLVDLFRSLLLTDVHLKPGDDSPSFPSHKALLAARS EIFKTMVDAESWKPPENNTITLPELNHEELESFLEFLYTATLPPEKLERDTCSGPWTRPRHFERGEVGGVRGQEPGFGCGGHEGFFGKCQRLAAAEQTIV IRDLTARYALWYYSLVVMHEWNLWNCGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56230			BTB/POZ domain-containing prot...		Lus10017414 [exp]	0	1
					Lus10012983 [exp]	1.4	0.8210
					Lus10021979 [exp]	1.4	0.7957
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10036458 [exp]	6.0	0.6858
					Lus10000292 [exp]	9.8	0.6182
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	12.0	0.7075
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	13.4	0.7329
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	15.5	0.6955
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	17.0	0.6955
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	18.3	0.6955
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	19.6	0.6955

Compare expression of checked genes

Lus10017414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.