Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 140 / 4e-43 unknown protein AT3G56220 122 / 4e-36 bHLH transcription regulators (.1) AT1G29270 54 / 1e-09 unknown protein AT5G10570 48 / 7e-07 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 45 / 7e-06 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 43 / 4e-05 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT5G65640 42 / 6e-05 bHLH bHLH093 beta HLH protein 93 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010217 [exp] 229 / 6e-78 AT2G40435 152 / 1e-47 unknown protein Lus10025257 [exp] 130 / 1e-38 AT2G40435 134 / 2e-40 unknown protein Lus10009089 [exp] 128 / 7e-38 AT2G40435 129 / 2e-38 unknown protein Lus10029251 [exp] 67 / 2e-14 AT2G40435 91 / 5e-24 unknown protein Lus10007304 [exp] 66 / 5e-14 AT1G29270 97 / 4e-26 unknown protein Lus10039631 [exp] 53 / 1e-08 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 50 / 2e-07 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132600 [exp] 132 / 5e-40 AT2G40435 155 / 2e-49 unknown protein Potri.006G106900 [exp] 130 / 3e-39 AT2G40435 150 / 4e-47 unknown protein Potri.013G154100 [exp] 126 / 2e-37 AT2G40435 126 / 9e-38 unknown protein Potri.019G126800 [exp] 118 / 3e-34 AT2G40435 144 / 1e-44 unknown protein Potri.004G060800 [exp] 61 / 4e-12 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 58 / 6e-11 AT1G29270 75 / 2e-17 unknown protein Potri.002G108400 [exp] 50 / 9e-08 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.012G106000 [exp] 42 / 6e-05 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.015G105200 [exp] 41 / 0.0001 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017415 pacid=23140269 polypeptide=Lus10017415 locus=Lus10017415.g ID=Lus10017415.BGIv1.0 annot-version=v1.0 ATGGTGGTGTCTAAGGAGAGCAGGATAATGCATGAGAAGCTGCAACTCCTTGGCTCCATTACCAACTCTCCTTCTGTGGACGGGATCTCAATCGTTGTGG ATGCATCCAACTACATTCAGCAGCTGAAGGAGAAGATTGTGAAACTCAATCAAGAAATGGATCATCATCAGTTAGCTTCTCCTGCTGTTGATGATGATGA TCAACCTTCTTCATCAACATCCCATGGAATCCCAGTGGTGACAGTGGAAACCCTAGAAAAGGGTTTCTTGATAAATGTAGTATCAGAGAAGAACTGCCCC GGGCTACTTGTATCCGTGTTAGAGGCATTCGAAGAGATCGGGCTTAACGTGGTTGAAGCCAGGGTTTCTTGTATCGACAGTTTTCGCCTCCAAGCAGTTG GCGGTGGACAGAATGAACAAGAAAGGGAGCAAGGCAGCATTGATGCACATATGGTAAAACGAACAGTGTTGCAGGCCATTCATGGATGGGAATGA
AA sequence Show only first row Show all	>Lus10017415 pacid=23140269 polypeptide=Lus10017415 locus=Lus10017415.g ID=Lus10017415.BGIv1.0 annot-version=v1.0 MVVSKESRIMHEKLQLLGSITNSPSVDGISIVVDASNYIQQLKEKIVKLNQEMDHHQLASPAVDDDDQPSSSTSHGIPVVTVETLEKGFLINVVSEKNCP GLLVSVLEAFEEIGLNVVEARVSCIDSFRLQAVGGGQNEQEREQGSIDAHMVKRTVLQAIHGWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40435			unknown protein		Lus10017415 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	3.5	0.8993
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	3.9	0.8965
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	4.0	0.9051
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	5.0	0.9116
AT5G65120			unknown protein		Lus10000581 [exp]	5.7	0.8760
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	7.3	0.8721
AT3G57930			unknown protein		Lus10031806 [exp]	7.5	0.8969
AT1G79915			Putative methyltransferase fam...		Lus10025778 [exp]	8.2	0.8422
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	9.2	0.8438
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	11.5	0.8790

Compare expression of checked genes

Lus10017415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.